View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11882_high_25 (Length: 238)

Name: NF11882_high_25
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11882_high_25
NF11882_high_25
[»] chr4 (9 HSPs)
chr4 (1-223)||(20277320-20277542)
chr4 (107-196)||(20460483-20460572)
chr4 (1-83)||(20460339-20460421)
chr4 (107-196)||(20438217-20438306)
chr4 (107-174)||(20449184-20449251)
chr4 (21-84)||(20438072-20438135)
chr4 (118-186)||(20442072-20442140)
chr4 (20-83)||(20474635-20474698)
chr4 (38-83)||(20449056-20449101)
[»] chr3 (2 HSPs)
chr3 (107-161)||(283511-283565)
chr3 (35-71)||(283427-283463)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20277320 - 20277542
Alignment:
Q  1 ttctggcatacaatcaatgtgtgtctgaatatatccacacaagcagttcgagcatacaatttgatttcatcatagaataaacactccttcattatggata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20277320 ttctggcatacaatcaatgtgtgtctgaatatatccacacaagcagttcgagcatacaatttgatttcatcatagaataaacactccttcattatggata 20277419  T
Q  101 agcacattaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgtatcaatatcaatataaaggatt 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20277420 agctcattaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgtatcaatatcaatataaaggatt 20277519  T
Q  201 tgaaaagtgtcgagtgttcattg 223  Q
    |||||||||||||||||||||||    
T  20277520 tgaaaagtgtcgagtgttcattg 20277542  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 20460483 - 20460572
Alignment:
Q  107 ttaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgtatcaatatcaatataaag 196  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20460483 ttaaaactcactcactaagctttgatgacttaaatatttttattgggcaagaacagctcaaaaaagagctgtatcaatatcaatataaag 20460572  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20460339 - 20460421
Alignment:
Q  1 ttctggcatacaatcaatgtgtgtctgaatatatccacacaagcagttcgagcatacaatttgatttcatcatagaataaaca 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  20460339 ttctggcatacaatcaatgtgtgtctgaatatatccacacaagcagttcgagcatacaatctgatttcatcgtagaataaaca 20460421  T

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Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 20438217 - 20438306
Alignment:
Q  107 ttaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgtatcaatatcaatataaag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||    
T  20438217 ttaaaactcactcactaagctttgatgacttaaatttatttattgtgcaagaacagcttagaaaagagatgtatcaatatcaatataaag 20438306  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 20449184 - 20449251
Alignment:
Q  107 ttaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagag 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  20449184 ttaaaactcactcactaagctttgatgacttaaatttatttattgtgcaagaacagctcagaaaagag 20449251  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 20438072 - 20438135
Alignment:
Q  21 gtgtctgaatatatccacacaagcagttcgagcatacaatttgatttcatcatagaataaacac 84  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20438072 gtgtctgactatatccacacaagcagttcgagcatacaatttgatttcatcgtagaataaacac 20438135  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 20442072 - 20442140
Alignment:
Q  118 tcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgtatcaatat 186  Q
    ||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20442072 tcactgagctttgaagactaaaatttattgattgggcaagaacagctcaaaaaagagctgtatcaatat 20442140  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 20474635 - 20474698
Alignment:
Q  20 tgtgtctgaatatatccacacaagcagttcgagcatacaatttgatttcatcatagaataaaca 83  Q
    ||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  20474635 tgtgtcttactatatccacacaagcagttcgagcatacaatttggtttcatcttagaataaaca 20474698  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 20449056 - 20449101
Alignment:
Q  38 cacaagcagttcgagcatacaatttgatttcatcatagaataaaca 83  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  20449056 cacaagcagttcgagcatacaatttgatttcatcgtagaataaaca 20449101  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 283511 - 283565
Alignment:
Q  107 ttaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaaca 161  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  283511 ttaaaactcactcacaaagctttgatgacttaaatttatctattgggtaagaaca 283565  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 283427 - 283463
Alignment:
Q  35 ccacacaagcagttcgagcatacaatttgatttcatc 71  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  283427 ccacacaagaagttagagcatacaatttgatttcatc 283463  T

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