View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11882_high_5 (Length: 552)

Name: NF11882_high_5
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11882_high_5
NF11882_high_5
[»] chr6 (3 HSPs)
chr6 (366-535)||(7368158-7368324)
chr6 (175-289)||(7368401-7368515)
chr6 (1-90)||(7368597-7368686)
[»] chr7 (8 HSPs)
chr7 (175-289)||(45632078-45632192)
chr7 (1-90)||(45632275-45632364)
chr7 (450-535)||(45623634-45623720)
chr7 (466-535)||(26643311-26643383)
chr7 (175-289)||(26643590-26643705)
chr7 (385-435)||(26643435-26643485)
chr7 (385-432)||(18565799-18565846)
chr7 (392-435)||(45631922-45631965)
[»] chr3 (4 HSPs)
chr3 (1-90)||(53159611-53159700)
chr3 (385-535)||(53161253-53161400)
chr3 (210-289)||(53161067-53161146)
chr3 (175-214)||(53159778-53159817)
[»] chr4 (4 HSPs)
chr4 (466-535)||(51033011-51033080)
chr4 (385-435)||(51032906-51032956)
chr4 (385-432)||(18809196-18809243)
chr4 (194-289)||(51032700-51032796)
[»] chr2 (5 HSPs)
chr2 (175-286)||(39905551-39905663)
chr2 (15-90)||(39905748-39905823)
chr2 (467-519)||(39905280-39905329)
chr2 (388-435)||(39905394-39905439)
chr2 (385-432)||(44483404-44483451)
[»] chr5 (1 HSPs)
chr5 (385-424)||(19833692-19833731)
[»] scaffold0164 (1 HSPs)
scaffold0164 (385-426)||(16553-16594)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 366 - 535
Target Start/End: Complemental strand, 7368324 - 7368158
Alignment:
Q  366 gaaattagatttcaagtcg-ttgaaacatgccatagaatttaccatttcctttcaactcctctccctttagnnnnnnnnnnnnnngttatccctttccat 464  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||              |||||||||||||||    
T  7368324 gaaattagatttcaagtcacttgaaacatgccatacaatttaccatttcctttcaactcctctccctttagtttttttttg----gttatccctttccat 7368229  T
Q  465 ataagatatttgtatacaattataagaagaaaggattaaggaatgaattaatttaaatagcccacctcatt 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7368228 ataagatatttgtatacaattataagaagaaaggattaaggaatgaattaatttaaatagcccacctcatt 7368158  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 7368515 - 7368401
Alignment:
Q  175 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgacaaatacgacctcttcctttttcagcaatagtactca 274  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7368515 tgcaccatattgaattgttaccggttatgcatcgttgtagcaattggaatgaagtcctagtgacaaatacggcctcttcctttttcagcaatagtactca 7368416  T
Q  275 cggttgttgttgatg 289  Q
    |||||||||||||||    
T  7368415 cggttgttgttgatg 7368401  T

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Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7368686 - 7368597
Alignment:
Q  1 cccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 90  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7368686 cccataatgtcaaaccggcgacaccttaactgccacggtcactatagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 7368597  T

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Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 45632192 - 45632078
Alignment:
Q  175 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  |||||| |||||||||||||||||||    
T  45632192 tgcaccatattgaattgttaccggttatggatcgttgtagcaactggaatgaagtcctagtgacaaaatacg-tctcttcatttttcagcaatagtactc 45632094  T
Q  274 acggttgttgttgatg 289  Q
    ||||||||||||||||    
T  45632093 acggttgttgttgatg 45632078  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45632364 - 45632275
Alignment:
Q  1 cccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 90  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  45632364 cccataatgtcaaaccggcgacactttaactgccacggtcactctagttattaaagaacaaatgaatgagtaaattaatggttttgtgat 45632275  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 450 - 535
Target Start/End: Complemental strand, 45623720 - 45623634
Alignment:
Q  450 gttatccctttccat-ataagatatttgtatacaattataagaagaaaggattaaggaatgaattaatttaaatagcccacctcatt 535  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45623720 gttatctctttccattataagatatttgtatacaattataagaagaaaggattaaagaatgaattaatttaaatagcccacctcatt 45623634  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 26643383 - 26643311
Alignment:
Q  466 taagatatttgtatacaattat---aagaagaaaggattaaggaatgaattaatttaaatagcccacctcatt 535  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26643383 taagatatttgtatacaattattataagaagaaaggattaaggaatgaattaatttaaatggcccacctcatt 26643311  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 26643705 - 26643590
Alignment:
Q  175 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgacaaat-acgacctcttcctttttcagcaatagtactc 273  Q
    ||||||||||| | || ||||||||||||||||| | |||| | ||| |||||||| ||||| ||||  |||  ||||||| ||||||||||||||||||    
T  26643705 tgcaccatatttagttattaccggttatggatcgctttagcgactggtatgaagtcgtagtggcaaaacacggtctcttcccttttcagcaatagtactc 26643606  T
Q  274 acggttgttgttgatg 289  Q
    ||| ||||||||||||    
T  26643605 acgattgttgttgatg 26643590  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 26643485 - 26643435
Alignment:
Q  385 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctttag 435  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  26643485 ttgaaacatgccatggaatttaccatttcctttcaactcctttccctttag 26643435  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 432
Target Start/End: Complemental strand, 18565846 - 18565799
Alignment:
Q  385 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctt 432  Q
    |||||| | |||||||||||| |||||||||||||||||||| |||||    
T  18565846 ttgaaatacgccatagaattttccatttcctttcaactcctccccctt 18565799  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 45631965 - 45631922
Alignment:
Q  392 atgccatagaatttaccatttcctttcaactcctctccctttag 435  Q
    |||||||||||||||||||||| |||||||||||  ||||||||    
T  45631965 atgccatagaatttaccatttcatttcaactccttcccctttag 45631922  T

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Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 53159611 - 53159700
Alignment:
Q  1 cccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 90  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53159611 cccataatgtcaaaccggcgacactttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 53159700  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 385 - 535
Target Start/End: Original strand, 53161253 - 53161400
Alignment:
Q  385 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctttagnnnnnnnnnnnnnngttatccctttccat-ataagatatttgtatacaa 483  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||||||              |||||| |||||||| |||||||||||||||||||    
T  53161253 ttgaaacatgccatagaatttaccagttactttcaactcctccccctttagttatattttg----gttatctctttccattataagatatttgtatacaa 53161348  T
Q  484 ttataagaagaaaggattaaggaatgaattaatttaaatagcccacctcatt 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53161349 ttataagaagaaaggattaaggaatgaattaatttaaatagcccacctcatt 53161400  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 53161067 - 53161146
Alignment:
Q  210 tgtagcaattggaatgaagtcctagtgacaaa-tacgacctcttcctttttcagcaatagtactcacggttgttgttgatg 289  Q
    |||||||| | ||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||    
T  53161067 tgtagcaacttgaatgaagtcctagtgacaaaatacgtc-tcttcctttttcagcaataatactcacggttgttgttgatg 53161146  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 53159778 - 53159817
Alignment:
Q  175 tgcaccatattgaattgttaccggttatggatcgttgtag 214  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53159778 tgcaccatattgaattgttaccggttatggatcgttgtag 53159817  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 51033011 - 51033080
Alignment:
Q  466 taagatatttgtatacaattataagaagaaaggattaaggaatgaattaatttaaatagcccacctcatt 535  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  51033011 taagatatttctatacaattataagaagaaaggattaaggaatgaattaatttaaatggtccacctcatt 51033080  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 51032906 - 51032956
Alignment:
Q  385 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctttag 435  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  51032906 ttgaaacatgccataaaatttgccatttcctttcaactcctttccctttag 51032956  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 432
Target Start/End: Complemental strand, 18809243 - 18809196
Alignment:
Q  385 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctt 432  Q
    |||||||| | |||||||||| |||||||||||||||||||| |||||    
T  18809243 ttgaaacacgtcatagaattttccatttcctttcaactcctccccctt 18809196  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 289
Target Start/End: Original strand, 51032700 - 51032796
Alignment:
Q  194 accggttatggatcgttgtagcaattggaatgaagtcctagtgacaaat-acgacctcttcctttttcagcaatagtactcacggttgttgttgatg 289  Q
    ||||||||||||||||| |||| |  || |||||||  ||||| ||||  ||| |||||||| |||||||||||| |||||||  || |||||||||    
T  51032700 accggttatggatcgttttagcgaccggtatgaagttgtagtggcaaaacacggcctcttcccttttcagcaataatactcaccatttttgttgatg 51032796  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 175 - 286
Target Start/End: Complemental strand, 39905663 - 39905551
Alignment:
Q  175 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactc 273  Q
    ||||||||||| ||||||||||||||||||||| || |||||| ||| |||||||||||||||| ||| ||| |||||||| |||||||   | ||||||    
T  39905663 tgcaccatatttaattgttaccggttatggatctttttagcaactggtatgaagtcctagtgacaaaacacggcctcttcccttttcagttgtggtactc 39905564  T
Q  274 acggttgttgttg 286  Q
    || ||||||||||    
T  39905563 accgttgttgttg 39905551  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 39905823 - 39905748
Alignment:
Q  15 ccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 90  Q
    |||||||||||||||||| ||||||||||| |||||| || || ||| ||||||||||||||||||||||||||||    
T  39905823 ccggcgacaccttaactgtcacggtcactccagttataaatgaccaactgaaagagtaaattaatgattttgtgat 39905748  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 39905329 - 39905280
Alignment:
Q  467 aagatatttgtatacaattataagaagaaaggattaaggaatgaattaattta 519  Q
    |||||||||| |||||||   ||||||||||||||||||||||||||||||||    
T  39905329 aagatatttggatacaat---aagaagaaaggattaaggaatgaattaattta 39905280  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 435
Target Start/End: Complemental strand, 39905439 - 39905394
Alignment:
Q  388 aaacatgccatagaatttaccatttcctttcaactcctctccctttag 435  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||||    
T  39905439 aaacatgctatagaatttaccatttcctttcaa--cctctccctttag 39905394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 432
Target Start/End: Original strand, 44483404 - 44483451
Alignment:
Q  385 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctt 432  Q
    |||||||| |||||||||||| | |||||||||||||||||| |||||    
T  44483404 ttgaaacacgccatagaattttcaatttcctttcaactcctccccctt 44483451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 424
Target Start/End: Complemental strand, 19833731 - 19833692
Alignment:
Q  385 ttgaaacatgccatagaatttaccatttcctttcaactcc 424  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  19833731 ttgaaacacgccatagaattttccatttcctttcaactcc 19833692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 16594 - 16553
Alignment:
Q  385 ttgaaacatgccatagaatttaccatttcctttcaactcctc 426  Q
    |||||||| ||||||||||||  |||||||||||||||||||    
T  16594 ttgaaacacgccatagaatttttcatttcctttcaactcctc 16553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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