View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_high_6 (Length: 551)
Name: NF11882_high_6
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 4159642 - 4160145
Alignment:
| Q |
1 |
ccaaatattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4159642 |
ccaaatattatccacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctca |
4159741 |
T |
|
| Q |
101 |
tgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4159742 |
tgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttct |
4159841 |
T |
|
| Q |
201 |
tgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaaatgggtttatgag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
4159842 |
tgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcaacttcatttcataacttaaagaaatgggtttatgag |
4159941 |
T |
|
| Q |
301 |
gaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggcta |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4159942 |
gaagatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggcta |
4160041 |
T |
|
| Q |
401 |
gtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactgg |
500 |
Q |
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| T |
4160042 |
gtgattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactgg |
4160141 |
T |
|
| Q |
501 |
taag |
504 |
Q |
| |
|
|||| |
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|
| T |
4160142 |
taag |
4160145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 4172360 - 4171857
Alignment:
| Q |
1 |
ccaaatattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctca |
100 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4172360 |
ccaactattatctacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctca |
4172261 |
T |
|
| Q |
101 |
tgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttct |
200 |
Q |
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||||| ||| |||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
4172260 |
tgcgtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctcacagttacttcagagcttct |
4172161 |
T |
|
| Q |
201 |
tgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaaatgggtttatgag |
300 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | || | |||||||||||| || ||||| ||| |||||||| |
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|
| T |
4172160 |
tgttaaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcataatttcaagaagtggatttatgag |
4172061 |
T |
|
| Q |
301 |
gaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggcta |
400 |
Q |
| |
|
||||||||||| || ||| || | |||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| | |||||||||| |||||| |
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|
| T |
4172060 |
gaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctatggcta |
4171961 |
T |
|
| Q |
401 |
gtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactgg |
500 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4171960 |
gtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatggaacaactgg |
4171861 |
T |
|
| Q |
501 |
taag |
504 |
Q |
| |
|
|||| |
|
|
| T |
4171860 |
taag |
4171857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 4177968 - 4177481
Alignment:
| Q |
1 |
ccaaatattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctca |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||| || |||||||||||||||||| ||||||| | ||| | | |||||||| |||||||| |
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|
| T |
4177968 |
ccaaatattattcacaatcatggcaaaccaatttcactttcaaatttagtttcaattcttcaagttccatcgtcgaaaataggtaacgtgcggcgtctca |
4177869 |
T |
|
| Q |
101 |
tgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttct |
200 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4177868 |
tgcgttacctcgcgcacaacggattctttgagataattacaaaa---------------gaagaagagtcttatgctctcactgttgcttcagagcttct |
4177784 |
T |
|
| Q |
201 |
tgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaaatgggtttatgag |
300 |
Q |
| |
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||||| ||| | ||| ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| | |||| || | ||||||||| |||||||| |
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| T |
4177783 |
tgttagaggtagtgatctttgtttagcaccaatggttgagtgtgttcttgatccaactctttcgggttcgtatcatgagctgaagaaatggatttatgag |
4177684 |
T |
|
| Q |
301 |
gaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggcta |
400 |
Q |
| |
|
|||||||| || || ||| ||| | |||||| | || ||| ||||| |||||| | ||||| ||||| ||||||| || || |||||||| |||||| |
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|
| T |
4177683 |
gaagatcttacactctttggtgttactttagggtctggtttttgggattttcttgataaaaatcctgaatataatagatcatttaatgatgcaatggcta |
4177584 |
T |
|
| Q |
401 |
gtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactgg |
500 |
Q |
| |
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||||||| ||| |||| || |||||| ||| ||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4177583 |
gtgattctaaattgataaacttggcattgagagattgtgattttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatggaaccactgg |
4177484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 494
Target Start/End: Original strand, 34343525 - 34343624
Alignment:
| Q |
395 |
tggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaac |
494 |
Q |
| |
|
||||||||||||| ||||| | |||||||| ||||| |||||| | ||||||||| ||| | || || |||||||||||||||||||||| |||||| |
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| T |
34343525 |
tggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactggaac |
34343624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 494
Target Start/End: Original strand, 34330971 - 34331017
Alignment:
| Q |
448 |
tttgaggggttggaatcaattgtggatgttggtggtggaaatggaac |
494 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||||||||||| |
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|
| T |
34330971 |
tttgaggggatagaatctattgtggatgttggtggtggaaatggaac |
34331017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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