View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_high_8 (Length: 499)
Name: NF11882_high_8
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 484
Target Start/End: Original strand, 6703594 - 6704071
Alignment:
| Q |
12 |
gagatgaacgattgtgcaaatggggagaacaagagaacaagacctaaactatctcagatatatggaacaagaaaagctaaacctatggtagcataagcta |
111 |
Q |
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|||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||| |
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| T |
6703594 |
gagaagaaggatggtgcaaatggggagaacaagagaacaagacctaacttatctcagatatatggaacaagaaaagctaaatctatggtagcatcatcta |
6703693 |
T |
|
| Q |
112 |
aatgaaaatgaaaagttagcatctaatcattgttnnnnnnn-cttagaaattttatcctaggtcagatctagctatagatatct---taagagcatgcat |
207 |
Q |
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| T |
6703694 |
aataaaaatgataagttatcatctaatcattgttaaaaaaaacgtagatattttatcctaggtcagatctagctatagatatctaattaagagcatgcat |
6703793 |
T |
|
| Q |
208 |
gattatttaaagatccaatgtatatgctaccccgtttcttgtaaggattcaaacctttattaagtaataatgaggcaacaagtagtagtgatgtaattcg |
307 |
Q |
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| T |
6703794 |
gattatttaaagatccaatgtatatgctaccccgtttcttgtaaggattcaaacctttattaagtaattatgaggcaacaagtagtagtggtgtaattcg |
6703893 |
T |
|
| Q |
308 |
ataatgaagtgtgtgcatgaagtatt-caaagtttcattcatggtggacacaccataatggcacatatacactaatggataataatatcactcaatgcat |
406 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6703894 |
ataatgaagtgtgtgcatgaagtatttcaaagttgcattcatggtggacacaccataatggcacatatacactaatggataataatatcactcaatgcat |
6703993 |
T |
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| Q |
407 |
ggcctcgtgcacataaatatgatgattaatttgtatgtaaaagtaaagtacacataaatcaccaaccaatgcaaatac |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6703994 |
ggcctcgtgcacataaatatgatgattaatttgtatgtaaaagtaaagtacacataaatcaccaaccaatgtaaatac |
6704071 |
T |
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