View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_10 (Length: 527)
Name: NF11882_low_10
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 43515934 - 43515682
Alignment:
| Q |
1 |
aggaagaataactgtgaagtcaaaaaccgtttctgataatgatgatttagaagttgatatttcattgagtccacgtgtcaatgctgtgaaaccttcaagg |
100 |
Q |
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| T |
43515934 |
aggaagaataactgtgaagtcaaaaaccgtttctgataatgatgatttagaagttgatatttcattgagtccacgtgtcaatgctgtgaaaccttcaagg |
43515835 |
T |
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| Q |
101 |
actgtggctataaccgatcaagcaaccgctcttgttcaagctggcgttccagttattctcttggcggctggtgagcctgattttgatacacctgctgtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43515834 |
actgtggctataaccgatcaagcaaccgctcttgttcaagctggcgttccagttattctcttggcggctggtgagcctgattttgattcacctgctgtca |
43515735 |
T |
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| Q |
201 |
tagctcaggtctttcccctttacattctcattttcaattcctcacattctgtc |
253 |
Q |
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| T |
43515734 |
tagctcaggtctttcccctttacattctcattttcaattcctcaaattctgtc |
43515682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 305 - 478
Target Start/End: Complemental strand, 43515677 - 43515504
Alignment:
| Q |
305 |
ttttttaacaatcatcaatgaatcttctttgctagtattttacatgtatgccatttttatattaaaattttcttaacgtatttaggttgtatcgtcgtaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
43515677 |
ttttttaacaatcatcaatgaatcttctttgctagtattttacatgtatacaatttttatattaaaattttcttaacttatttaggttgtatcgttgtaa |
43515578 |
T |
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| Q |
405 |
cttaaatttcaaacctttctcgtatcacttattcgagtcgtatcgcacccgtactatgtactcggcttcataag |
478 |
Q |
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| T |
43515577 |
cttaaatttcaaacctttctcgtatcacttattcgtgtcgtatcgcacccgtactatgtactcggcttcataag |
43515504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 38106476 - 38106334
Alignment:
| Q |
50 |
gaagttgatatttcattgagtccacgtgtcaatgctgtgaaaccttcaaggactgtggctataaccgatcaagcaaccgctcttgttcaagctggcgttc |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| || |||||||| |||||||| |||||||||||||||| |
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| T |
38106476 |
gaagttgatatttcattgagtccacgtgtcaatgctgttaagccttcaagaactgtcgctattactgatcaagccaccgctctcgttcaagctggcgttc |
38106377 |
T |
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| Q |
150 |
cagttattctcttggcggctggtgagcctgattttgatacacc |
192 |
Q |
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| T |
38106376 |
ctgttattcgcttggctgccggtgaacctgattttgatacacc |
38106334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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