View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_12 (Length: 449)
Name: NF11882_low_12
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 26245486 - 26245099
Alignment:
| Q |
19 |
gtactgactccagaaatttagctaaattttgtggctgggtaagataaaatttgaacagttcttataatagtgggtcccacttaagtgctagagtatgaag |
118 |
Q |
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| T |
26245486 |
gtactgactccagaaatttagctaaattttgtggctgggtaagataaaatttggacagttcttataatagtgggtcccacttaagtgctagagtatgaag |
26245387 |
T |
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| Q |
119 |
tgttggtaaggatgtcaaatggtacttctccactcctcgtctcatcgcctaaaatgccccaccacaaagcgtcccagtttccgatggatctccgtctgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26245386 |
tgttggtaaggatgtcaaatggtacttctccactcctcgtctcatcgcctaaaatgccccaccacaaagcgtcccagtttccgatggatctccgtctgta |
26245287 |
T |
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| Q |
219 |
tctattcgaataaaagaaagtgtgttaacatatataggatttttgctaaagtgcgttagacattaaatatgaacatctctctcgtttaaaatttgaatct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26245286 |
tctattcgaataaaagaaagtgtgttaacatatataggatttttgttaaagtgcgttagacattaaatatgaacatctctctcgtttaaaatttgaatct |
26245187 |
T |
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| Q |
319 |
tgattcatcgcgataaggtggtggatatgatcttcatctttgtccccgaactattttgaaaatgactttctcccttgtctccatctct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26245186 |
tgattcatcgcgataaggtggtggatatgatcttcatctttgtccccgaactattttgaaaatgactttctcccttgtctccatctct |
26245099 |
T |
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