View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_13 (Length: 403)
Name: NF11882_low_13
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 364
Target Start/End: Original strand, 7708530 - 7708884
Alignment:
| Q |
12 |
gagatgaatgtaccaatatggagtgacacaaagtgacacnnnnnnnaaacaatcaatttcataatattatttgttcttctttcttcnnnnnnnnnnnnnn |
111 |
Q |
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| T |
7708530 |
gagatgaatgtaccaacatggagtgacgcaaagtgacactttttttaaacaatcaatttcataatattatttgttcttctttcttcaaaaataaaaaata |
7708629 |
T |
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| Q |
112 |
nnnctaat--taatttgttagtatttgttggaggcggaaattgaaacaatgactattcttactattctactactaaactcatttatccccgtcactaagt |
209 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
7708630 |
aaattaatgataatttgttagtatttgttggaggcggaaattgaaacaataactattcttaccattccactactaaactcatttatccccgtcactaagt |
7708729 |
T |
|
| Q |
210 |
cagacttatatctattgtgatatatacttgattgtcataaccatttgtttaagagtatgattcttaatcagtgcatttgaaaaagaaatatataagaaga |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
7708730 |
cagtcttatatctattgtgatatatacttgattgtcataactatttggtcaagaatatgatccttaatcagtatgtttgaaaaagaaatatataagaaga |
7708829 |
T |
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| Q |
310 |
gatgaatctcttaaatgaatctcaatcacattagtttgtgcaatttgattgatat |
364 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7708830 |
gatgaatctcttaaatgaatctcaattacattagtttgtgcaatttgattgatat |
7708884 |
T |
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