View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_16 (Length: 370)
Name: NF11882_low_16
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 52699850 - 52700196
Alignment:
| Q |
9 |
agcataggttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaa |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699850 |
agcattggttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaa |
52699949 |
T |
|
| Q |
109 |
gtttttacctatgtgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699950 |
gtttttacctatgtgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcg |
52700049 |
T |
|
| Q |
209 |
gaagttggttgagtagtgctttggtgaagactgttaccgctgcgaccggaggacaagataaagggtggttaagaaggaaggatcttaatgaaagcaggtt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52700050 |
gaagttggttgagtagtgctttggtgaagactgttaccgctacgaccggaggacaagataaagggtggttaagaaggaaggatcttaatgaaagcaggtt |
52700149 |
T |
|
| Q |
309 |
ggattggttcttctggatattgacagttctcaatgctgtcaatttct |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52700150 |
ggattggttcttctggatattgacagttctcaatgctgtcaatttct |
52700196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 55 - 355
Target Start/End: Original strand, 52714173 - 52714470
Alignment:
| Q |
55 |
agcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgtgggacagttggagtttttctatgatgaggcga |
154 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| || |||||||| | |
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| T |
52714173 |
agcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagtttttacctatgtgggacagttagaatttttttacgatgaggcaa |
52714272 |
T |
|
| Q |
155 |
cggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtgctttggtgaagactgttaccgctgcgac |
254 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||| |||| |||||||||||||| | || | ||| || |
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| T |
52714273 |
cggatgggacaaaaagtattagtagtgcaatgtttttgtctaagattggaattggaagttggttaagtactgctttggtgaagattattgtagatgcaac |
52714372 |
T |
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| Q |
255 |
cggaggacaagataaagggtggttaagaaggaaggatcttaatgaaagcaggttggattggttcttctggatattgacagttctcaatgctgtcaatttc |
354 |
Q |
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||||||||||| ||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52714373 |
tggaggacaagagaaagggtggct---aaggaataatcttaatgaaagcaagttggattggttcttctggatattgacgattctcaatgctgtcaatttc |
52714469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 55 - 355
Target Start/End: Original strand, 52723195 - 52723492
Alignment:
| Q |
55 |
agcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgtgggacagttggagtttttctatgatgaggcga |
154 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| || |||||||| | |
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| T |
52723195 |
agcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagtttttacctatgtgggacagttagaatttttttacgatgaggcaa |
52723294 |
T |
|
| Q |
155 |
cggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtgctttggtgaagactgttaccgctgcgac |
254 |
Q |
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| || |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| |||| |||||||||||||| | || | ||| || |
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| T |
52723295 |
cagatgggacaaaaagtattagtagtgcaatgtttttgtctctgattggaattggaagttggttaagtactgctttggtgaagattattgtagatgcaac |
52723394 |
T |
|
| Q |
255 |
cggaggacaagataaagggtggttaagaaggaaggatcttaatgaaagcaggttggattggttcttctggatattgacagttctcaatgctgtcaatttc |
354 |
Q |
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||||||||||| ||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52723395 |
tggaggacaagagaaagggtggct---aaggaataatcttaatgaaagcaagttggattggttcttctggatattgacgattctcaatgctgtcaatttc |
52723491 |
T |
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