View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_17 (Length: 349)
Name: NF11882_low_17
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 45081917 - 45082226
Alignment:
| Q |
22 |
aatggagttcatataaaatggatcagtaaaatagtggtattattcattacttttcaaaacttaaattccttatatatactatatccttatggaagaaaat |
121 |
Q |
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| T |
45081917 |
aatggcgtgcatataaaatggatcagtaaaatagtggtattattcattacttttcaaaacttagattcc----atatactatatccttatggaagaaaat |
45082012 |
T |
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| Q |
122 |
agcatttgatgtcctaacaacaataccattaaa-ctccctcnnnnnnnnnnnnnn---caatagcattaaagttcaaattttacatccacattatcagaa |
217 |
Q |
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| T |
45082013 |
agcatttgatgtcctaacaacaatagcattaaagctccctcaaaaaaaaaaaaaaaaacaatagcattaaatttcaatttttacatccacattatcagaa |
45082112 |
T |
|
| Q |
218 |
gacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttccttctctttcagcagttca |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082113 |
gacactactttggaagttgcaagtcttgaattgaacattttcaatgggtagtttatctcttggaaaaggacattcaatttccttctctttcagcagttca |
45082212 |
T |
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| Q |
318 |
catggtttaggaac |
331 |
Q |
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|||||||||||||| |
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| T |
45082213 |
catggtttaggaac |
45082226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 178 - 331
Target Start/End: Original strand, 45077777 - 45077930
Alignment:
| Q |
178 |
atagcattaaagttcaaattttacatccacattatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgt |
277 |
Q |
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| T |
45077777 |
atagcattaaaattaaaattttacatccatgttatcagaagacactactttggaagttacaagtcttgaattgaacattttcgatggctagtttatctgt |
45077876 |
T |
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| Q |
278 |
tggaaaaggacattcaatttccttctctttcagcagttcacatggtttaggaac |
331 |
Q |
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| T |
45077877 |
tggaaaaggacattcaatttccttctcttgcagcaattcacatggtttaggaac |
45077930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 331
Target Start/End: Original strand, 45067008 - 45067140
Alignment:
| Q |
200 |
acatccacattatcagaagacacta-ctttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttc |
298 |
Q |
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||||||| ||||||| |||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45067008 |
acatccatattatcataagacattaactttgaaagttacaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcgatttt |
45067107 |
T |
|
| Q |
299 |
cttctctttcagcagttcacatggtttaggaac |
331 |
Q |
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| T |
45067108 |
cttctctggcagcatatcacatggtttaggaac |
45067140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 45074584 - 45074660
Alignment:
| Q |
218 |
gacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaa |
294 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
45074584 |
gacactacttttgaagttacaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaa |
45074660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 177 - 331
Target Start/End: Original strand, 12697949 - 12698102
Alignment:
| Q |
177 |
aatagcattaaagttcaaattttacatccacattatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctg |
276 |
Q |
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| T |
12697949 |
aatagcattaaagttcaa-ttatacatccatgttaatagaagacactactttgaaagttacaagtcttgaacagaacattttcaatgggtagtttaactg |
12698047 |
T |
|
| Q |
277 |
ttggaaaaggacattcaatttccttctctttcagcagttcacatggtttaggaac |
331 |
Q |
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|||||||||||||||||||| ||||| || ||||| |||||||||||||||||| |
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| T |
12698048 |
ttggaaaaggacattcaattcccttcgctagcagcaattcacatggtttaggaac |
12698102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 34504344 - 34504466
Alignment:
| Q |
209 |
ttatcagaagacactactttggaagttgcaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcaatttccttctctttc |
308 |
Q |
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||||||||| |||||||||| | ||| ||||||||||||||||||| |||||| | | ||||||||||||||| ||||||||||||| ||||||| | |
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| T |
34504344 |
ttatcagaacacactacttttaatgttacaagtcttgaactgaacatcttcaatagccaatttatctgttggaaagggacattcaattttcttctctgac |
34504443 |
T |
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| Q |
309 |
agcagttcacatggtttaggaac |
331 |
Q |
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||||| ||||||||||||||||| |
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| T |
34504444 |
agcagatcacatggtttaggaac |
34504466 |
T |
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