View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_18 (Length: 342)
Name: NF11882_low_18
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 51547998 - 51548320
Alignment:
| Q |
1 |
agaagcatcaagcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactcatt |
100 |
Q |
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| T |
51547998 |
agaagcatcaagcagttgcattaagagtgaacgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactcatt |
51548097 |
T |
|
| Q |
101 |
tagacaattctatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaatattatatcaagaatg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51548098 |
tagacaattctatagagagtgtgacatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaacattatatcaagaatg |
51548197 |
T |
|
| Q |
201 |
ccattacctaaccaatacactgtcatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaattttagctacta |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51548198 |
ccattacctaaccaatacactgtaatcactgcacagtcaagagattcacctgatgaagacactggcatctcaatccaaaactgttcaattttagctacta |
51548297 |
T |
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| Q |
301 |
ctgatttgtataacaactctaac |
323 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
51548298 |
ctgatttgtataacaactataac |
51548320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 19476431 - 19476639
Alignment:
| Q |
1 |
agaagcatcaagcagttgcattaagagtgaatgcagacgtaacagctttttacaaatgtgcaatgtatggttaccaagacacactttatgttcactcatt |
100 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
19476431 |
agaaacatcaagcagttgcattaagagtaaatgcagatttaacagcattttacaaatgcgcaatttatggttaccaagacacactttatgtccactcatt |
19476530 |
T |
|
| Q |
101 |
tagacaattctatagagagtgtgatatttttgggaccatagattacatatttggaaatgcagcagtagttttacaagcatgtaatattatatcaagaatg |
200 |
Q |
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||||||||||| | || || || |||| ||||| ||||||| ||||||||| || || |||||||| ||||||| ||| | || ||||||||||| |
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| T |
19476531 |
cagacaattctaccgcgaatgcgacatttacgggacaatagatttcatatttggtaacgccgcagtagtattacaagaatgcgacatcgtatcaagaatg |
19476630 |
T |
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| Q |
201 |
ccattacct |
209 |
Q |
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||||||||| |
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| T |
19476631 |
ccattacct |
19476639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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