View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_20 (Length: 311)
Name: NF11882_low_20
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 32921656 - 32921928
Alignment:
| Q |
18 |
aatatgatgaactttatgacactcataacatttctcctcttcattatgccttcaatttcttactcccaatatcttggaaacaacatattactcactaacc |
117 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32921656 |
aatatgatgaactttatgacactcatcacatttcttctcttcattatgccttcaatttcttactcccaatatcttggaaacaacatattactcactaacc |
32921755 |
T |
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| Q |
118 |
gtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32921756 |
gtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaa |
32921855 |
T |
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| Q |
218 |
cttaaatcttcttcatgttggtaaagatgtcgagttttataataaggtgacaataacatctttttggcatcaa |
290 |
Q |
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| T |
32921856 |
cttaaatcttcttcatgttggtaaagatgttgagttttataataaggtgacaataacatctttttggcatcaa |
32921928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 276
Target Start/End: Original strand, 32910355 - 32910525
Alignment:
| Q |
106 |
tactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttacca |
205 |
Q |
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| T |
32910355 |
tactcactaatcgaaagattttccaaaaacaagaaacaatttcctcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttacca |
32910454 |
T |
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| Q |
206 |
ttttgatcaaaacttaaatcttcttcatgttggtaaagatgtcgagttttataataaggtgacaataacat |
276 |
Q |
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| T |
32910455 |
ttttgatcagaacttagatcttcttcatattggcaaagatgttgagttttttaataaggtgacaataacat |
32910525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 265
Target Start/End: Original strand, 32940370 - 32940594
Alignment:
| Q |
38 |
actcataacatttctcctcttcattatgccttcaatttcttactcccaatatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaa |
137 |
Q |
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|||||| |||||||| |||||| | |||||| |||| |||| ||||||||||||||||||||| ||| ||||| || ||||| || || ||||||||| |
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| T |
32940370 |
actcatcacatttctactcttcttgatgcctacaatctcttcctcccaatatcttggaaacaatata---ctcaccaatcgtaaaatatttccaaaacaa |
32940466 |
T |
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| Q |
138 |
gaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttg |
237 |
Q |
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| T |
32940467 |
gaaactctaacctcgtacgctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattg |
32940566 |
T |
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| Q |
238 |
gtaaagatgtcgagttttataataaggt |
265 |
Q |
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| T |
32940567 |
gcaacgatgttgagttttataataaggt |
32940594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 63 - 232
Target Start/End: Original strand, 32932167 - 32932333
Alignment:
| Q |
63 |
atgccttcaatttcttactcccaatatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttg |
162 |
Q |
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|||||| |||| ||| |||||||||| | ||||||||| || |||||||| || |||||||||| |||||||||| | | | ||||| ||||| |
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| T |
32932167 |
atgcctgcaatcacttcctcccaatatttaggaaacaaccta---ctcactaatcgaaagattttccaaaaacaagaaaccttaacatcttacgctgtca |
32932263 |
T |
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| Q |
163 |
tgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttca |
232 |
Q |
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| T |
32932264 |
tatttgatgctggtagcactggtactcgtgtccatgtttaccattttgaccagaacttagatcttcttca |
32932333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 32897449 - 32897545
Alignment:
| Q |
149 |
ctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagat |
245 |
Q |
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| T |
32897449 |
ctcttatgctgttatttttgatgctggtagctctggtagccgtgttcatgtttttcattttgatcagaatttagatcttgttcacattggcaaagat |
32897545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 11822176 - 11822438
Alignment:
| Q |
18 |
aatatgatgaactttatgacactcataacatttctcctcttcattatgccttcaatttcttactcccaatatcttggaaacaacatattactcactaacc |
117 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11822176 |
aatatgatgaactttatgacactcatcacatttctactcttcataatgccttccatttcttactcccaaaatcttggaaacaacatattactcactaacc |
11822275 |
T |
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| Q |
118 |
gtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaa |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11822276 |
gtaagattttcccaaaacaagaaacaatttcctcttacgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaa |
11822375 |
T |
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| Q |
218 |
cttaaatcttcttcatgttggtaaagatgtcgagttttataataaggtgacaataacatcttt |
280 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11822376 |
cttaaatcttcttcatgttggtaaagatgttgagttttataataaggtgacaataacatcttt |
11822438 |
T |
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