View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_22 (Length: 298)
Name: NF11882_low_22
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 26915136 - 26915418
Alignment:
| Q |
1 |
ttttgctctttcgaaattgcactcaaatggtgcaatattgttttggatcatttggaaagttgagcttatttgtttgtatattttccttcacacttggacc |
100 |
Q |
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| T |
26915136 |
ttttgctctttcgaaattgcactcaaatggtgcaatattgttttggatcatttggaaagttgagcttatttgtttgtatattttccttcac--ttggacc |
26915233 |
T |
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| Q |
101 |
tttgtggacctttctatcagcagatgtttctgcttttccttttccttaagcagtagagttcgtacataaatttgtctctgtcatttcactttttagttgc |
200 |
Q |
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| T |
26915234 |
tttgtggacctttctatcagcagatgtttctgcttttccttttccttaagcagtagagttcgtacataaatttgtctctgtcatttcactttttagttgc |
26915333 |
T |
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| Q |
201 |
attattcgaagttgcttgaaagtgtc----ttattcttgcaattgagaaggggttctctaatcccaattgatgctaattcaacaa |
281 |
Q |
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| T |
26915334 |
attattcgaagttgcttgaaagtgtcttatttattcttgcaattgagaaggggttctctaatcccgattgatactaattcaacaa |
26915418 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 8463784 - 8463722
Alignment:
| Q |
219 |
aaagtgtcttattcttgcaattgagaaggggttctctaatcccaattgatgctaattcaacaa |
281 |
Q |
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| T |
8463784 |
aaagtgtcttattcttgcaattgagaaagggttctcaaatcctaatcgatgctaatccaacaa |
8463722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 8463860 - 8463793
Alignment:
| Q |
151 |
cagtagagttcgtacataaatttgtctctgtcatttcactttttagttgcattattcgaagttgcttgaaagt |
223 |
Q |
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| T |
8463860 |
cagtagagttcttacataaatttgtcatt-tcattt----ttttagttgcattatttgaagttgcttgaaagt |
8463793 |
T |
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