View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_26 (Length: 270)
Name: NF11882_low_26
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 38830973 - 38830724
Alignment:
| Q |
7 |
tttactagggttcttagaccttgttctcaacacatgcatcctttttagttccaataaaggtgagcaaccacgatttaacaatgtattaaaattcatgttt |
106 |
Q |
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| T |
38830973 |
tttactagggttcttagaccttgttctcaacacatgcatcctttttagttctaataaaggtgagcaaccttgatttaacaatgtcttaaaattcatgttt |
38830874 |
T |
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| Q |
107 |
tgaagtgactccttcacaacatgctcagagaagttaaggatagccctatatcctcgtgttaagaaagctgcttggtcataagctaaagcagctgcttcag |
206 |
Q |
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| T |
38830873 |
tgaagagactccttcacaacatgctcagagaagttaaggatagccctatatcctcgtgttaagaaagctgcttggtcataagctaaagcagctgcttcag |
38830774 |
T |
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| Q |
207 |
ctgtatcaaatgttccaatccacacacgaacaccatttcttgttgtgtcc |
256 |
Q |
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| T |
38830773 |
ctgtatcaaatgttccaatccacacacgaacaccatttcttgttgtgtcc |
38830724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 38862531 - 38862450
Alignment:
| Q |
170 |
aaagctgcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaatccacacacgaacaccatttcttgttg |
251 |
Q |
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| T |
38862531 |
aaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttg |
38862450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 30623874 - 30623969
Alignment:
| Q |
156 |
atcctcgtgttaagaaagctgcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaatccacacacgaacaccatttcttgttg |
251 |
Q |
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| T |
30623874 |
atcctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttg |
30623969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 30629505 - 30629600
Alignment:
| Q |
156 |
atcctcgtgttaagaaagctgcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaatccacacacgaacaccatttcttgttg |
251 |
Q |
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| T |
30629505 |
atcctcttgttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttg |
30629600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 30689733 - 30689781
Alignment:
| Q |
176 |
gcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaa |
224 |
Q |
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| T |
30689733 |
gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaa |
30689781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 30718776 - 30718824
Alignment:
| Q |
176 |
gcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaa |
224 |
Q |
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| T |
30718776 |
gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaa |
30718824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 4420155 - 4420197
Alignment:
| Q |
182 |
tcataagctaaagcagctgcttcagctgtatcaaatgttccaa |
224 |
Q |
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| T |
4420155 |
tcataagctaaagcagcttgttcagctgtatcaaatgtaccaa |
4420197 |
T |
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