View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11882_low_28 (Length: 252)

Name: NF11882_low_28
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11882_low_28
NF11882_low_28
[»] chr1 (20 HSPs)
chr1 (39-208)||(30694112-30694281)
chr1 (1-75)||(37553111-37553186)
chr1 (2-74)||(27055676-27055749)
chr1 (2-74)||(35760475-35760548)
chr1 (39-96)||(52853903-52853961)
chr1 (22-74)||(46435641-46435694)
chr1 (28-87)||(32151773-32151833)
chr1 (39-89)||(37553424-37553475)
chr1 (1-74)||(508704-508778)
chr1 (2-75)||(12458454-12458528)
chr1 (2-48)||(24656298-24656344)
chr1 (2-74)||(10920548-10920621)
chr1 (2-74)||(46835231-46835304)
chr1 (22-80)||(29119512-29119571)
chr1 (39-96)||(14188683-14188741)
chr1 (26-87)||(49901608-49901670)
chr1 (39-79)||(508432-508473)
chr1 (1-81)||(13414070-13414151)
chr1 (6-74)||(30694284-30694353)
chr1 (6-51)||(34503768-34503813)
[»] scaffold1532 (1 HSPs)
scaffold1532 (2-96)||(1582-1677)
[»] chr5 (7 HSPs)
chr5 (1-96)||(15145485-15145581)
chr5 (2-75)||(26637633-26637707)
chr5 (2-74)||(14148903-14148976)
chr5 (2-69)||(39058094-39058162)
chr5 (22-74)||(18014475-18014528)
chr5 (1-74)||(12383537-12383611)
chr5 (25-88)||(33106031-33106095)
[»] chr4 (12 HSPs)
chr4 (1-79)||(7017027-7017106)
chr4 (1-80)||(8434534-8434614)
chr4 (1-80)||(34042033-34042113)
chr4 (2-64)||(51573389-51573452)
chr4 (1-75)||(13385711-13385786)
chr4 (28-87)||(51964935-51964995)
chr4 (1-74)||(34293171-34293245)
chr4 (28-88)||(34293118-34293179)
chr4 (25-85)||(36225479-36225540)
chr4 (26-88)||(8434404-8434467)
chr4 (26-96)||(51574025-51574095)
chr4 (59-96)||(7834687-7834724)
[»] chr8 (24 HSPs)
chr8 (1-52)||(15438178-15438229)
chr8 (1-52)||(15529482-15529533)
chr8 (2-74)||(3469232-3469305)
chr8 (2-74)||(42906815-42906888)
chr8 (26-96)||(1566081-1566152)
chr8 (27-80)||(25113098-25113152)
chr8 (28-96)||(9478942-9479011)
chr8 (29-96)||(4203390-4203458)
chr8 (26-96)||(13474621-13474692)
chr8 (1-74)||(8624895-8624969)
chr8 (39-80)||(38776580-38776622)
chr8 (32-96)||(14124526-14124591)
chr8 (1-45)||(4203128-4203172)
chr8 (2-54)||(30805955-30806007)
chr8 (27-85)||(1565795-1565854)
chr8 (1-48)||(6148831-6148878)
chr8 (1-52)||(13474917-13474968)
chr8 (28-85)||(4203045-4203103)
chr8 (1-74)||(9479003-9479077)
chr8 (39-88)||(40304622-40304672)
chr8 (39-84)||(42443526-42443572)
chr8 (28-80)||(961382-961435)
chr8 (29-96)||(4047531-4047598)
chr8 (28-87)||(8624843-8624903)
[»] chr2 (14 HSPs)
chr2 (25-96)||(29404143-29404214)
chr2 (1-74)||(31659330-31659404)
chr2 (1-75)||(3670828-3670903)
chr2 (28-96)||(3670894-3670964)
chr2 (2-74)||(10863018-10863091)
chr2 (28-96)||(6831626-6831696)
chr2 (28-96)||(30712053-30712122)
chr2 (2-74)||(44021217-44021290)
chr2 (26-92)||(3677451-3677518)
chr2 (25-80)||(29406783-29406837)
chr2 (26-80)||(31659628-31659683)
chr2 (26-79)||(3678092-3678146)
chr2 (52-96)||(9792403-9792447)
chr2 (28-86)||(31659281-31659338)
[»] chr6 (6 HSPs)
chr6 (2-74)||(18053630-18053703)
chr6 (28-96)||(18053695-18053763)
chr6 (2-74)||(31730402-31730475)
chr6 (26-85)||(18052887-18052947)
chr6 (1-52)||(6851839-6851890)
chr6 (25-80)||(31731092-31731148)
[»] chr3 (26 HSPs)
chr3 (2-74)||(93372-93445)
chr3 (5-77)||(44682161-44682234)
chr3 (26-91)||(44682463-44682528)
chr3 (25-96)||(31152881-31152953)
chr3 (1-52)||(6515261-6515312)
chr3 (26-96)||(6746458-6746529)
chr3 (28-86)||(14986045-14986104)
chr3 (2-80)||(30991604-30991683)
chr3 (1-52)||(39499465-39499516)
chr3 (1-74)||(42371008-42371082)
chr3 (1-74)||(45713753-45713827)
chr3 (2-74)||(25147640-25147713)
chr3 (1-68)||(8814361-8814429)
chr3 (42-96)||(6475427-6475482)
chr3 (2-75)||(27065251-27065325)
chr3 (28-96)||(45713691-45713761)
chr3 (28-92)||(42371074-42371138)
chr3 (25-80)||(31153725-31153781)
chr3 (25-96)||(33580182-33580253)
chr3 (26-96)||(48117006-48117078)
chr3 (58-96)||(25891218-25891256)
chr3 (28-72)||(4085859-4085904)
chr3 (5-69)||(18195537-18195602)
chr3 (59-96)||(46970008-46970045)
chr3 (28-75)||(14986006-14986054)
chr3 (25-96)||(33580750-33580822)
[»] scaffold0538 (2 HSPs)
scaffold0538 (1-96)||(4062-4158)
scaffold0538 (1-52)||(8527-8578)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-81)||(280606-280687)
[»] chr7 (9 HSPs)
chr7 (28-80)||(23657265-23657318)
chr7 (30-93)||(38796720-38796784)
chr7 (27-85)||(46916506-46916565)
chr7 (2-75)||(23657309-23657383)
chr7 (7-64)||(24791087-24791145)
chr7 (39-96)||(1507664-1507723)
chr7 (26-80)||(23657856-23657911)
chr7 (2-48)||(30073424-30073470)
chr7 (40-96)||(7561601-7561658)
[»] scaffold0096 (2 HSPs)
scaffold0096 (22-80)||(41605-41664)
scaffold0096 (39-96)||(40710-40768)
[»] scaffold0778 (2 HSPs)
scaffold0778 (2-52)||(3260-3310)
scaffold0778 (39-79)||(3193-3234)
[»] scaffold0193 (1 HSPs)
scaffold0193 (2-75)||(22850-22924)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 30694281 - 30694112
Alignment:
Q  39 ttgctaacttgcacttagtatttttaggtgggtgtaagttagtagcccccatatatattttagtttttgtcatataactcaacaattagattaatccaac 138  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  30694281 ttgctaacttgcacttagtatttttatgtggatgtaagttagtagcccc-atatatattttagtttttgtcgtataactcaaccattagattaatccaac 30694183  T
Q  139 ggcttagaatagggcagtaggaagctgtggat-aactccgttgttgaggatccaattttctttgcattctg 208  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||    
T  30694182 ggcttagaatagggcagtaggaagctctggataaactccgttgttgaggatccaatttcctttgcattctg 30694112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37553186 - 37553111
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaa 75  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||    
T  37553186 cttataaaaatgagtatagataatcaagtgggtgtaggttgctaacttgcaccttagtgtttttagatgggtgtaa 37553111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 27055749 - 27055676
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  27055749 ttataaaaatgagtgtatataatcaagtgggtgtaggttgctaacttacaccttagtatttttaggtgggtgta 27055676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 35760475 - 35760548
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  35760475 ttataaaaatgagtgtatataatcaagtgggtgtaggttgctaacttacaccttagtatttttaggtgggtgta 35760548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 52853903 - 52853961
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||    
T  52853903 ttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcctccatatatat 52853961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 46435641 - 46435694
Alignment:
Q  22 aatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  46435641 aatcaagtgggtgtaggttgctaacttacaccttagtatttttaggtgggtgta 46435694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 32151773 - 32151833
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccc 87  Q
    |||||||||  |||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  32151773 gtgggtgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcccc 32151833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 37553424 - 37553475
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccca 89  Q
    |||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  37553424 ttgctaacttgcaccttagtatttttaggtggatgtaagttagcagccccca 37553475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 508704 - 508778
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||||||||||||| |||  ||||||||||||||| |||  ||||||||| ||||||| |||||||||| ||||    
T  508704 cttataaaaatgagtgtaagtaatcaagtgggtgtatgtttgtaacttgcaccttagtaattttaggtggatgta 508778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 12458454 - 12458528
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaa 75  Q
    ||||||||||||||  ||| |||||| ||||||||||||| ||||||||| |||| |  ||||||||||||||||    
T  12458454 ttataaaaatgagtgcaaataatcaaatgggtgtaagttggtaacttgcaccttaatgattttaggtgggtgtaa 12458528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 24656344 - 24656298
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaactt 48  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  24656344 ttataaaaatgagtataaataattaagtgggtgtatgttgctaactt 24656298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 10920621 - 10920548
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| |||| ||| ||||| | ||| |||||||||||||| |||| || |||||||||||||||    
T  10920621 ttataaaaatgagtgtaaataattaagtgagcgtaggttgctaacttgcaccttaataattttaggtgggtgta 10920548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 46835231 - 46835304
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| || | |||||||||||||| | |||||||||| || |||| ||||||||||||| ||||    
T  46835231 ttataaaaatgagtgtatataatcaagtgggtgttatttgctaacttacaccttaatatttttaggtggatgta 46835304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 29119512 - 29119571
Alignment:
Q  22 aatcaagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    |||||| |||||||| ||||||||||| ||| |||||||||||| |||||||||| ||||    
T  29119512 aatcaaatgggtgtaggttgctaacttacaccttagtatttttaagtgggtgtaaattag 29119571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 14188741 - 14188683
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||||||| ||| | |||||||||||||||||||||| |||||  ||||||||    
T  14188741 ttgctaacttgcaccttaatgtttttaggtgggtgtaagttagcagcccatatatatat 14188683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 49901608 - 49901670
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccc 87  Q
    ||||||||| |  ||||| |||||||| ||||| |||||||||||||||||||||| ||||||    
T  49901608 aagtgggtgcagcttgcttacttgcaccttagtgtttttaggtgggtgtaagttagcagcccc 49901670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 508473 - 508432
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagtta 79  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  508473 ttgctaacttgcaccttagtgtttttaggtgggtgtaagtta 508432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13414070 - 13414151
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttagt 81  Q
    |||||||||| || | |||| ||| ||||||||||| |||||||| || || |||| || ||| ||||||||||||||||||    
T  13414070 cttataaaaacgaatgtaaataataaagtgggtgtatgttgctaatttacaccttaataatttaaggtgggtgtaagttagt 13414151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 30694353 - 30694284
Alignment:
Q  6 aaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||| |||| |||| ||||||||||||| | |||||||||||||| |||| || |||||||||| ||||    
T  30694353 aaaaaagagtgtaaataatcaagtgggtggaggttgctaacttgcaccttaataattttaggtggatgta 30694284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 34503768 - 34503813
Alignment:
Q  6 aaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca 51  Q
    |||||| |||||||| ||||||||||||||| |||| |||||||||    
T  34503768 aaaaataagtataaataatcaagtgggtgtaggttggtaacttgca 34503813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 1582 - 1677
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||| |||||  ||||||||    
T  1582 ttataaaaatgagtgtaaataatcaagtgggtgtatgttgctaacttgcaccttagtgtttttaggtaggtgtaagttagcagcccatatatatat 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 15145485 - 15145581
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||||||| ||||  |||||||||||||| |||||||| ||||| |||| ||||||||||||| |||||||||| |||||| ||||||||    
T  15145485 cttataaaaatgagtgtaaatgatcaagtgggtgtaggttgctaatttgcaccttattatttttaggtggatgtaagttagcagccccaatatatat 15145581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 26637633 - 26637707
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaa 75  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||    
T  26637633 ttataaaaatgagtataaataatcaagtgggtgtaggttactaacttgcaccttagtatttttagttgggtgtaa 26637707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 14148976 - 14148903
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  14148976 ttataaaaatgagtgtatataatcaagtgggtgtaggttgctaacttacaccttagtatttttaggtgggtgta 14148903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 39058094 - 39058162
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgg 69  Q
    |||||||||||||| || | ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  39058094 ttataaaaatgagtgtatataatcaagtgggtgtaagttgctaacttacaccttagtatttttaggtgg 39058162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 18014475 - 18014528
Alignment:
Q  22 aatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  18014475 aatcaagtgggtgtaggttgctaacttacaccttagtatttttaggtgggtgta 18014528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 12383611 - 12383537
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||| | || |||| ||||||||||||||| ||||| |||||||| |||| || |||||||||||||||    
T  12383611 cttataaaaacgtgtctaaataatcaagtgggtgtaggttgccaacttgcaccttaatagttttaggtgggtgta 12383537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 33106031 - 33106095
Alignment:
Q  25 caagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttagtagccccc 88  Q
    ||||||||||||  ||||||||||||| |||||| ||||||| |||||| || ||||||| ||||    
T  33106031 caagtgggtgtagcttgctaacttgcaccttagtgtttttagatgggtgcaaattagtagtcccc 33106095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7017106 - 7017027
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagtta 79  Q
    ||||||||||||||| |||| ||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  7017106 cttataaaaatgagtgtaaataatcaagtgagtgtaggttgctaacttgcaccttagtgtttttaggtgggtgtaagtta 7017027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8434534 - 8434614
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttag 80  Q
    ||||||||||||||| |||| ||||||||||||||| | |||||||||||| |||||| |||||||||| |||||||||||    
T  8434534 cttataaaaatgagtgtaaataatcaagtgggtgtaggatgctaacttgcaccttagtgtttttaggtgagtgtaagttag 8434614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 34042033 - 34042113
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttag 80  Q
    ||||||||||||||| |||| |||||||||| |||| |||||||||||||| |||||| ||||||||||||||||| ||||    
T  34042033 cttataaaaatgagtgtaaataatcaagtggatgtaggttgctaacttgcaccttagtgtttttaggtgggtgtaatttag 34042113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 51573452 - 51573389
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtattttta 64  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  51573452 ttataaaaatgagtgtaaataatcaagtgggtgtaggttgctaacttgcaccttagtattttta 51573389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13385786 - 13385711
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaa 75  Q
    |||||||| |||||| |||| ||||||||||||| ||||||| ||||||||| ||||||||||  |||||||||||    
T  13385786 cttataaacatgagtgtaaataatcaagtgggtgcaagttgcaaacttgcacattagtattttggggtgggtgtaa 13385711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 51964935 - 51964995
Alignment:
Q  28 gtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttagtagcccc 87  Q
    |||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||||    
T  51964935 gtgggtgtaacttgctaacttgcatcttagtgtttttagatgggtgtaagttagcagcccc 51964995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34293245 - 34293171
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||||||||||||| |||| |||||||  |||||| |||||||||||||| |||| || ||||| |||||||||    
T  34293245 cttataaaaatgagtgtaaataatcaagcaggtgtaggttgctaacttgcaccttaataattttacgtgggtgta 34293171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 34293179 - 34293118
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccc 88  Q
    |||||||||  |||||||||||||| ||| | |||||||||||||||||||||| |||||||    
T  34293179 gtgggtgtagcttgctaacttgcaccttaatgtttttaggtgggtgtaagttagcagccccc 34293118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 36225479 - 36225540
Alignment:
Q  25 caagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcc 85  Q
    ||||||||||||  |||||||||||||| ||||| |||||| ||||||||||||||| ||||    
T  36225479 caagtgggtgtagcttgctaacttgcaccttagtgtttttaagtgggtgtaagttagcagcc 36225540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 8434467 - 8434404
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccc 88  Q
    ||||||||| |  |||||||||||||| ||||| |||| ||||||||||||||||| |||||||    
T  8434467 aagtgggtgcagtttgctaacttgcaccttagtgttttcaggtgggtgtaagttagcagccccc 8434404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 51574025 - 51574095
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||||  |||||||||||||| ||| | ||||||||||| |||||||||| || ||||||||||||    
T  51574025 aagtgggtgtagtttgctaacttgcaccttaatgtttttaggtggttgtaagttagcag-ccccatatatat 51574095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 7834687 - 7834724
Alignment:
Q  59 tttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  7834687 tttttaggtgggtgtaaattagcagcccccatatatat 7834724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15438229 - 15438178
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac 52  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15438229 cttataaaaatgagtataaataatcaagtgggtgtaagttgctaacttgcac 15438178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15529533 - 15529482
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac 52  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15529533 cttataaaaatgagtataaataatcaagtgggtgtaagttgctaacttgcac 15529482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 3469232 - 3469305
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  3469232 ttataaaaatgagtgtatataatcaagtgggtgtaggttgctaacttacaccttagtatttttaggtgggtgta 3469305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 42906888 - 42906815
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  42906888 ttataaaaatgagtgtatataatcaagtgggtgtaggttgctaacttacaccttagtatttttaggtgggtgta 42906815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 1566081 - 1566152
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||| |  |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  1566081 aagtgggtgcagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcccccatatatat 1566152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 25113098 - 25113152
Alignment:
Q  27 agtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  25113098 agtgggtgtaggttgctaacttgcaccttagtgtttttaggtgggtgtaagttag 25113152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 9479011 - 9478942
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||  |||||||||||||| ||||| |||||||||||||||||||||| |||||  ||||||||    
T  9479011 gtgggtgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcccttatatatat 9478942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 4203390 - 4203458
Alignment:
Q  29 tgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||| || |||||||||||||| ||||| |||||||||| ||||||||||| ||||| |||||||||    
T  4203390 tgggtgcaacttgctaacttgcaccttagtgtttttaggtgagtgtaagttagcagccctcatatatat 4203458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 13474692 - 13474621
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||| || |||||||||||||| ||||| ||||||||||| |||||||||| |||||  ||||||||    
T  13474692 aagtgggtgcaacttgctaacttgcaccttagtgtttttaggtggatgtaagttagcagcccatatatatat 13474621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8624969 - 8624895
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||||||||||||| |||| ||||||||||||||| | |||||| ||||| |||| || ||||| |||||||||    
T  8624969 cttataaaaatgagtgtaaataatcaagtgggtgtaggatgctaatttgcaccttaataattttatgtgggtgta 8624895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 38776580 - 38776622
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  38776580 ttgctaacttgcaccttagtatttttaggtgggtgtaagttag 38776622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 14124526 - 14124591
Alignment:
Q  32 gtgtaagttgctaacttgcactt-agtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||| |||||||||||||||| ||| ||||||||||| |||||||| |  ||||||||||||||    
T  14124526 gtgtaacttgctaacttgcactttagtgtttttaggtggatgtaagttggcggcccccatatatat 14124591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4203172 - 4203128
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaa 45  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||||    
T  4203172 cttataaaaatgagtgtaaataatcaagtgggtgtaggttgctaa 4203128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 30806007 - 30805955
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcactt 54  Q
    |||||||||||||| |||| |||||||||| |||| ||||||||||| |||||    
T  30806007 ttataaaaatgagtgtaaataatcaagtggatgtaggttgctaacttacactt 30805955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 1565854 - 1565795
Alignment:
Q  27 agtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcc 85  Q
    ||||||||||  |||||||||||||| ||||| |||||| ||||||||||||||| ||||    
T  1565854 agtgggtgtagcttgctaacttgcaccttagtgtttttaagtgggtgtaagttagcagcc 1565795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6148878 - 6148831
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaactt 48  Q
    |||| ||||||||||| ||| | |||||||||||||||||||||||||    
T  6148878 cttacaaaaatgagtaaaaatattcaagtgggtgtaagttgctaactt 6148831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13474917 - 13474968
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac 52  Q
    ||||||||||||||| |||| |||||||| | |||| |||||||||||||||    
T  13474917 cttataaaaatgagtgtaaataatcaagtagatgtatgttgctaacttgcac 13474968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 4203103 - 4203045
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcc 85  Q
    |||||||||  ||||||| |||||| |||||||||||||||| ||||||||||| ||||    
T  4203103 gtgggtgtagcttgctaatttgcaccttagtatttttaggtgagtgtaagttaggagcc 4203045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9479077 - 9479003
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||||||||| ||| |||| ||| || |||||| | |||||||||||||| |||| || |||||||||||||||    
T  9479077 cttataaaaataagtgtaaataataaaatgggtgaaggttgctaacttgcaccttaataattttaggtgggtgta 9479003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 40304622 - 40304672
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccc 88  Q
    |||||||||||||| ||||| |||||||||||||| ||||||| |||||||    
T  40304622 ttgctaacttgcaccttagtgtttttaggtgggtgcaagttagcagccccc 40304672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 42443526 - 42443572
Alignment:
Q  39 ttgctaacttgca-cttagtatttttaggtgggtgtaagttagtagc 84  Q
    ||||||||||||| |||| | ||||||||||||||||||||||||||    
T  42443526 ttgctaacttgcatcttaatgtttttaggtgggtgtaagttagtagc 42443572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 961382 - 961435
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    |||||||||| ||  |||||||||| ||||| ||||||||||||||||||||||    
T  961382 gtgggtgtaacttattaacttgcaccttagtgtttttaggtgggtgtaagttag 961435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 4047598 - 4047531
Alignment:
Q  29 tgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||| |||||||||||||| |||| |||||||| ||| ||||||||||  || ||||||||||||    
T  4047598 tgggtgtaggttgctaacttgcaccttaatatttttaagtgagtgtaagttaacag-ccccatatatat 4047531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 8624903 - 8624843
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccc 87  Q
    |||||||||  || ||||||||||| ||||| |||||||||| ||||||||||| ||||||    
T  8624903 gtgggtgtagtttactaacttgcaccttagtgtttttaggtgagtgtaagttagcagcccc 8624843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 29404214 - 29404143
Alignment:
Q  25 caagtgggtgtaagttgctaacttgcacttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||||    
T  29404214 caagtgggtgtagcttgctaacttgcacttagtgtttttaggtgggtgtaagttagcagccccactatatat 29404143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31659404 - 31659330
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| || ||||| |||||||||    
T  31659404 cttataaaaatgagtataaataatcaagtgggtgtaggttgctaacttgcaccttaataattttatgtgggtgta 31659330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3670828 - 3670903
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaa 75  Q
    ||||||||||| ||| |||| ||||||||||||||| |||||||||||||| |||| || | ||||||||||||||    
T  3670828 cttataaaaataagtgtaaataatcaagtgggtgtaggttgctaacttgcaccttaataatattaggtgggtgtaa 3670903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 3670894 - 3670964
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccc-atatatat 96  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||||||| |||| ||||||| ||||||||    
T  3670894 gtgggtgtaacttgctaacttgcaccttaatatttttaggtgggtgtaaattagcagccccctatatatat 3670964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 10863018 - 10863091
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| || | ||||||||||||||| ||||||||||| || ||| || ||||||||||||||||    
T  10863018 ttataaaaatgagtgtacataatcaagtgggtgtaggttgctaacttacaccttggtgtttttaggtgggtgta 10863091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 6831626 - 6831696
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccc-atatatat 96  Q
    |||||||||  |||||||||||||| || || |||||||||||||||||||||| ||||||| ||||||||    
T  6831626 gtgggtgtagcttgctaacttgcaccttggtgtttttaggtgggtgtaagttagcagccccctatatatat 6831696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 30712122 - 30712053
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||| |||||||||||||| |||||  ||||||||| ||||||||||| ||||| | |||||||    
T  30712122 gtgggtgtaacttgctaacttgcaccttagtgattttaggtgagtgtaagttagcagccctcctatatat 30712053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 44021290 - 44021217
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| |||| |||||| | ||||||  ||||||||||||| |||| || |||||||||||||||    
T  44021290 ttataaaaatgagtgtaaataatcaaataggtgtagattgctaacttgcaccttaataattttaggtgggtgta 44021217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 3677518 - 3677451
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatat 92  Q
    |||| ||||||  |||||||||||||| ||||| |||||| ||||||||||| ||| |||||||||||    
T  3677518 aagtaggtgtagcttgctaacttgcaccttagtgtttttaagtgggtgtaaggtagcagcccccatat 3677451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 29406783 - 29406837
Alignment:
Q  25 caagtgggtgtaagttgctaacttgcacttagtatttttaggtgggtgtaagttag 80  Q
    ||||||||||||| |||||||||| | |||||| |||||||||| |||||||||||    
T  29406783 caagtgggtgtaacttgctaacttac-cttagtgtttttaggtgagtgtaagttag 29406837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 31659628 - 31659683
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    ||||||||| |  |||||||||||||| ||||||||||||||||| ||||||||||    
T  31659628 aagtgggtgcagcttgctaacttgcaccttagtatttttaggtggatgtaagttag 31659683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 3678092 - 3678146
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagtta 79  Q
    |||||||||||  || |||||||| || |||||||||||||||||||||||||||    
T  3678092 aagtgggtgtagcttactaacttgtaccttagtatttttaggtgggtgtaagtta 3678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 9792403 - 9792447
Alignment:
Q  52 cttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||||| |||||||||| |||| |||||| ||||||||    
T  9792403 cttagtatttttaagtgggtgtaaattagcagccccaatatatat 9792447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 31659338 - 31659281
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccc 86  Q
    |||||||||  |||||||||||||| |||||||||  ||||||||||||||||| |||||    
T  31659338 gtgggtgtagcttgctaacttgcaccttagtattt--aggtgggtgtaagttagcagccc 31659281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 18053630 - 18053703
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| || |||||||||||||||    
T  18053630 ttataaaaatgagtgtaaataatcaagtggatgtaagttgctaacttgcaccttaataattttaggtgggtgta 18053703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 18053695 - 18053763
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||  |||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  18053695 gtgggtgtagcttgctaacttgcaccttagtgtttttaggtgggtataagttagtag-ccccatatatat 18053763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 31730475 - 31730402
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| |||| |||||||||| ||||||||| |||||||||  ||| || |||||||||||||||    
T  31730475 ttataaaaatgagtgtaaataatcaagtggatgtaagttgataacttgcattttaataattttaggtgggtgta 31730402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 18052947 - 18052887
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcc 85  Q
    ||||||||| |  |||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  18052947 aagtgggtgcagtttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcc 18052887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6851890 - 6851839
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac 52  Q
    ||||||||||| ||| |||| ||||||||| ||||| |||||||||||||||    
T  6851890 cttataaaaataagtgtaaataatcaagtgagtgtaggttgctaacttgcac 6851839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 31731092 - 31731148
Alignment:
Q  25 caagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    ||||||| ||||| ||||||| |||||| ||||||||||| ||| ||||||||||||    
T  31731092 caagtggatgtaacttgctaatttgcaccttagtatttttgggtaggtgtaagttag 31731148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 93445 - 93372
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| || | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  93445 ttataaaaatgagtgtagataatcaagtgggtgtaggttgctaacttacaccttagtatttttaggtgggtgta 93372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 44682234 - 44682161
Alignment:
Q  5 taaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagt 77  Q
    ||||||||||| |||| ||||||||||||||| |||| ||||||||| |||||| || ||||||||||||||||    
T  44682234 taaaaatgagtgtaaataatcaagtgggtgtaggttgttaacttgcaccttagtgttcttaggtgggtgtaagt 44682161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 44682463 - 44682528
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcacttagtatttttaggtgggtgtaagttagtagcccccata 91  Q
    ||||||||| |  |||||||||||||| |||| |||||||||||||||||||||| ||||||||||    
T  44682463 aagtgggtgcagcttgctaacttgcacctagtgtttttaggtgggtgtaagttagcagcccccata 44682528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 31152953 - 31152881
Alignment:
Q  25 caagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||| || |||||||||||||| ||||| ||||||||||| || ||||||| |||||||||||||||    
T  31152953 caagtgggtgcaacttgctaacttgcaccttagtgtttttaggtggatgcaagttagcagcccccatatatat 31152881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6515312 - 6515261
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac 52  Q
    ||||||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  6515312 cttataaaaatgagtgtaaataatcaagtgggtgtaggttgctaacttgcac 6515261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 6746529 - 6746458
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||| |  |||||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||    
T  6746529 aagtgggtgcagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcccctatatatat 6746458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 14986045 - 14986104
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccc 86  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||    
T  14986045 gtgggtgtaacttgctaacttgcaccttagtgtttttaggtgggtgtaagttagcagccc 14986104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 30991683 - 30991604
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttag 80  Q
    |||||||||||||| || | |||||||||| |||| ||||||||||| || |||||||||||||||||| ||||| ||||    
T  30991683 ttataaaaatgagtgtatataatcaagtggatgtatgttgctaacttacaccttagtatttttaggtggatgtaaattag 30991604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39499516 - 39499465
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac 52  Q
    ||||||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  39499516 cttataaaaatgagtgtaaataatcaagtgggtgtaggttgctaacttgcac 39499465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42371008 - 42371082
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||||||||||||| |||| |||||||||| |||| |||||||||||||| |||| || || ||||||||||||    
T  42371008 cttataaaaatgagtgtaaataatcaagtggatgtaggttgctaacttgcaccttaatagttataggtgggtgta 42371082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 45713827 - 45713753
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    ||||||||||| ||| |||| ||||||||| ||||| |||||||||||||| |||| || |||||||||||||||    
T  45713827 cttataaaaataagtgtaaataatcaagtgagtgtaggttgctaacttgcaccttaataattttaggtgggtgta 45713753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 25147713 - 25147640
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgta 74  Q
    |||||||||||||| |||| |||||||| | |||| |||||||||||||| |||| || |||||||||||||||    
T  25147713 ttataaaaatgagtgtaaataatcaagtagatgtaggttgctaacttgcaccttaataattttaggtgggtgta 25147640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8814429 - 8814361
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtg 68  Q
    ||||||||||||||| |||| |||| ||||| |||| |||||||||||||| |||||| ||||||||||    
T  8814429 cttataaaaatgagtgtaaataatctagtggatgtaggttgctaacttgcaccttagtgtttttaggtg 8814361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 6475427 - 6475482
Alignment:
Q  42 ctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||    
T  6475427 ctaacttgcaccttagtgtttttaggtgggtgtaagttagcagcccctatatatat 6475482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 27065325 - 27065251
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaa 75  Q
    |||||||||||||| || | ||||||||||||||| ||||| |||||  || ||||| |||||||||||||||||    
T  27065325 ttataaaaatgagtgtatataatcaagtgggtgtatgttgcaaacttatacattagtgtttttaggtgggtgtaa 27065251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 45713761 - 45713691
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccc-atatatat 96  Q
    |||||||||  |||||||||||||| ||||| ||||||||||||||||||| || ||||||| ||||||||    
T  45713761 gtgggtgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagtcagcagccccctatatatat 45713691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 42371074 - 42371138
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatat 92  Q
    |||||||||  |||||||||||||| ||||||||||||||| |||||||||||| ||| |||||||    
T  42371074 gtgggtgtagcttgctaacttgcaccttagtatttttaggt-ggtgtaagttagcagctcccatat 42371138  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 31153725 - 31153781
Alignment:
Q  25 caagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    ||||||||||||  |||||||||||||| ||||| |||||||||||||| |||||||    
T  31153725 caagtgggtgtagcttgctaacttgcaccttagtgtttttaggtgggtgcaagttag 31153781  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 33580253 - 33580182
Alignment:
Q  25 caagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||||  |||| ||||||||| ||||| |||||||||||||||||||||| | | |||||||||||    
T  33580253 caagtgggtgtagcttgc-aacttgcaccttagtgtttttaggtgggtgtaagttagcaacacccatatatat 33580182  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 48117078 - 48117006
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccc-atatatat 96  Q
    ||||||||| || |||||||||| ||| ||| |||||||||||||||||||||||  ||||||| ||||||||    
T  48117078 aagtgggtgcaacttgctaacttacaccttaatatttttaggtgggtgtaagttatcagccccctatatatat 48117006  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 25891256 - 25891218
Alignment:
Q  58 atttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  25891256 atttttaggtgggtgtaagttaggagtccccatatatat 25891218  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 4085904 - 4085859
Alignment:
Q  28 gtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtg 72  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||    
T  4085904 gtgggtgtaacttgctaacttgcaccttaatatttttaggtgggtg 4085859  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 18195602 - 18195537
Alignment:
Q  5 taaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgg 69  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| |||| |||| || ||||||||||    
T  18195602 taaaaatgagtgtaaataattaagtgggtgtaggttgctaacatgcatcttaataattttaggtgg 18195537  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 46970045 - 46970008
Alignment:
Q  59 tttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||||||||||||||||| | |||||||||||||    
T  46970045 tttttaggtgggtgtaagttagcaacccccatatatat 46970008  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 14986006 - 14986054
Alignment:
Q  28 gtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaa 75  Q
    ||||||||| |||||||||||||| |||| || ||||||||||||||||    
T  14986006 gtgggtgtaggttgctaacttgcaccttaataattttaggtgggtgtaa 14986054  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 33580750 - 33580822
Alignment:
Q  25 caagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||||  ||||||||||| || ||| |  |||||||| |||||||||||| |||||| ||||||||    
T  33580750 caagtgggtgtagcttgctaacttgtaccttaatgattttaggtaggtgtaagttagcagcccctatatatat 33580822  T

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Target: scaffold0538 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4062 - 4158
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    |||||||| |||||| |||| |||||||||| ||| ||||||||||||||| |||| ||||||  |||| |||||||||| || |||||||||||||    
T  4062 cttataaacatgagtgtaaataatcaagtggatgtcagttgctaacttgcaccttattattttagggtgtgtgtaagttattaacccccatatatat 4158  T

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Target: scaffold0538; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8527 - 8578
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac 52  Q
    |||||||| |||||| |||| |||||||||||||||||||||||||||||||    
T  8527 cttataaacatgagtgtaaataatcaagtgggtgtaagttgctaacttgcac 8578  T

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Target: scaffold0006 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 280606 - 280687
Alignment:
Q  1 cttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagt 81  Q
    ||||||||||||| | |||| ||| ||||||||||| |||||||| |||||| ||| || ||||||||||||||||||||||    
T  280606 cttataaaaatgaatgtaaataataaagtgggtgtatgttgctaatttgcactttaataattttaggtgggtgtaagttagt 280687  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 23657318 - 23657265
Alignment:
Q  28 gtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23657318 gtgggcgtaacttgctaacttgcaccttagtatttttaggtgggtgtaagttag 23657265  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 38796720 - 38796784
Alignment:
Q  30 gggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatata 93  Q
    |||||||  |||||||||||||| ||| | |||||||||||||||||||||| ||||||||||||    
T  38796720 gggtgtagtttgctaacttgcaccttaatgtttttaggtgggtgtaagttagcagcccccatata 38796784  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 46916565 - 46916506
Alignment:
Q  27 agtgggtgtaagttgctaacttgcact-tagtatttttaggtgggtgtaagttagtagcc 85  Q
    ||||||||||  ||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  46916565 agtgggtgtagcttgctaacttgcaccgtagtatttttaggtgggtgtaagttagcagcc 46916506  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 23657383 - 23657309
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaa 75  Q
    |||| ||||||||| |||| |||||||||| |||| |||||||||||||| |||| || ||||||||||| ||||    
T  23657383 ttatcaaaatgagtgtaaataatcaagtggatgtaggttgctaacttgcaccttaataattttaggtgggcgtaa 23657309  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 24791087 - 24791145
Alignment:
Q  7 aaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtattttta 64  Q
    ||||||||| |||| ||||||||||||||| ||||||||||| || |||||||||||||    
T  24791087 aaaatgagtgtaaataatcaagtgggtgtaggttgctaacttacaccttagtattttta 24791145  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1507664 - 1507723
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagccccc-atatatat 96  Q
    |||||||||||||| ||||| ||||||| |||||||||||||| ||||||| ||||||||    
T  1507664 ttgctaacttgcaccttagtgtttttagatgggtgtaagttagcagccccctatatatat 1507723  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 23657856 - 23657911
Alignment:
Q  26 aagtgggtgtaagttgctaacttgcac-ttagtatttttaggtgggtgtaagttag 80  Q
    |||| ||||||  |||||||||||||| ||||| ||||||||||||||||||||||    
T  23657856 aagttggtgtagcttgctaacttgcaccttagtgtttttaggtgggtgtaagttag 23657911  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 30073424 - 30073470
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaactt 48  Q
    |||||||| ||||||||| ||||||||| ||||||||||| ||||||    
T  30073424 ttataaaagtgagtataagcaatcaagtaggtgtaagttgttaactt 30073470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 7561658 - 7561601
Alignment:
Q  40 tgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||||| ||||||||||| |||| ||||||||||| || || |||||||||    
T  7561658 tgctaacttgcaccttagtatttttgggtgtgtgtaagttagcagacctcatatatat 7561601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 41605 - 41664
Alignment:
Q  22 aatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaagttag 80  Q
    ||||||||||||| || ||||||||||||| |||||| ||||||||| ||||||||||||    
T  41605 aatcaagtgggtgcaacttgctaacttgcaccttagtgtttttaggtaggtgtaagttag 41664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 40768 - 40710
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagttagtagcccccatatatat 96  Q
    ||||||||||| || ||||| ||||||||| |||||||||||| |||||||||||||||    
T  40768 ttgctaacttgtaccttagtgtttttaggtaggtgtaagttagcagcccccatatatat 40710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 3310 - 3260
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgcac 52  Q
    |||||||||||||| |||| |||||||||||| || |||||||||||||||    
T  3310 ttataaaaatgagtgtaaataatcaagtgggtataggttgctaacttgcac 3260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 3234 - 3193
Alignment:
Q  39 ttgctaacttgcac-ttagtatttttaggtgggtgtaagtta 79  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  3234 ttgctaacttgcacattagtttttttaggtgggtgtaagtta 3193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 22924 - 22850
Alignment:
Q  2 ttataaaaatgagtataaacaatcaagtgggtgtaagttgctaacttgca-cttagtatttttaggtgggtgtaa 75  Q
    |||||||||||| | || | |||||||| | |||||||||||||||| || |||||||||||||| ||| |||||    
T  22924 ttataaaaatgattgtatataatcaagtagatgtaagttgctaacttacaccttagtatttttagatggatgtaa 22850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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