View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_29 (Length: 238)
Name: NF11882_low_29
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35018544 - 35018320
Alignment:
| Q |
1 |
ttgacaactatgaagtattttaattaaccaacagagcaacataaacttgaatagaactttttattatatgaacacgaccccttaatgtacattaacaact |
100 |
Q |
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| T |
35018544 |
ttgacaactatgaagtattttaattaaccaacagagcaacataaacttgaatagaactttttattatatgaacacgaccccttaatgtacattaacaact |
35018445 |
T |
|
| Q |
101 |
at--gaagtactagattttacttttgaaataattaatccaacattagaagtaacatttttgttgatctcttagaaccttataaagtgcctagtggctaca |
198 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35018444 |
atatgaagtactagattttacttttgaaataattaatccaacattagaagtaacatttttgttgatctcttacaaccttataaagtgcctagtggctaca |
35018345 |
T |
|
| Q |
199 |
ctcaacaggaacaccttgtgggaat |
223 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
35018344 |
ctcaacaggaacaccttgtgggaat |
35018320 |
T |
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