View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_3 (Length: 718)
Name: NF11882_low_3
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 89 - 700
Target Start/End: Original strand, 31764164 - 31764774
Alignment:
| Q |
89 |
aggtgtttctctgccactagatatctgactatacaatatagaaaaattacattcacataaacaaatacagtnnnnnnntcacatcaattattttattctt |
188 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| |
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| T |
31764164 |
aggtgtttctctaccactagatatctgactatacaatatagaaaaattacatccacataaacaaatacagtaaaaaaatcacatcaattattttatcctt |
31764263 |
T |
|
| Q |
189 |
gtatttgtgataaatgttaaacaatgtgagaca--cacaccgcccttgccctttgtgtttgtttgaggaacatttatcttttgtcatgattataaggttg |
286 |
Q |
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| T |
31764264 |
gtatttgtgataaatgttaaacaatgtgacacaaacacaccgcccttgccctttgtgtttgtttaaggaacatttatcttttgtcatgattataaggttg |
31764363 |
T |
|
| Q |
287 |
gaagttctctgtcagtatctcactttaaatatgggctctgatgcaaacactgtttcatatactttatgtctagatcttcaaagatgctggatatgcatat |
386 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31764364 |
gaagttccctgtcagtatctcactttaaatatgggctctgatgcaaacactgtttcatatactttatgtctagatcttcaaagatgctggatatgcatat |
31764463 |
T |
|
| Q |
387 |
ctcagggaatcctaaggattatgagtcaggaaaattatatttatatttctttttcattaaatataaaaattcttttgtcagtttatcattgaggaaaaac |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31764464 |
ctcagggaatcctaaggattatgagtcaggaaaattatatttatatttctttttcattaaatataaaaattcttttgtcagtttatcattgaggaaaaac |
31764563 |
T |
|
| Q |
487 |
ttcatttagttaatgaagttgttgtagatactaataaattagtttttaactgttttttagtcggattttaccattcctttgtaaaatcatgcaaagggaa |
586 |
Q |
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| T |
31764564 |
ttcatttagttaatgaa---gttgtagatactaataaattagtttttaactgttttttagttggattttaccattcctttgtaaaaacatgcaaagggaa |
31764660 |
T |
|
| Q |
587 |
tggaataatcatgttggtgacatctctaatcattattatgattattactttcattctaaagaaactaattgaccaattttacattacaaattatatataa |
686 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31764661 |
tggaataatcatgttggtgacatctctaatcattattatgattattactttcattctaaagaaactaattgaccaattttacattacaaattatatataa |
31764760 |
T |
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| Q |
687 |
ttaattgattgatg |
700 |
Q |
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|||||||||||||| |
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| T |
31764761 |
ttaattgattgatg |
31764774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 31764095 - 31764128
Alignment:
| Q |
19 |
ataatgttctgtcataaaccatattttatattca |
52 |
Q |
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| T |
31764095 |
ataatgttctgtcataaaccatattttatattca |
31764128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 1607418 - 1607363
Alignment:
| Q |
238 |
tttgtgtttgtttgaggaacatttatcttttgtcatgattataaggttggaagttc |
293 |
Q |
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| T |
1607418 |
tttgtgtttgtttgaggaacatttttcttttgtcatgattataaggttggaagttc |
1607363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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