View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_31 (Length: 235)
Name: NF11882_low_31
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 11226231 - 11226450
Alignment:
| Q |
2 |
taaaatgaacctatgtcaacaaaa-aactatggcactcaagtatttccccataacaaacacttaataagagtgttttagtaacagaaactcgttttatta |
100 |
Q |
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| T |
11226231 |
taaaatgaacctatgtcaccaaaaaaactatggcacccaagtatttccccataacaaacacttaataagagtgttttagttacaaaaactcgttttatta |
11226330 |
T |
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| Q |
101 |
ttcaaattaacacaactaatcattttcttggatacttttcacaactatcaactaacaacaatctcgtacttccaatactacacctagattttcaaaaatc |
200 |
Q |
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| T |
11226331 |
ttcaaattaacacaactaatcattttctgtaatacttttcacaactatcaactaacaacaatctcgtacttccaatactacacctagattttcaaaaatc |
11226430 |
T |
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| Q |
201 |
tcaaacgcaagtatcaatca |
220 |
Q |
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| T |
11226431 |
tcaaacgcaagtatcaatca |
11226450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23396017 - 23396063
Alignment:
| Q |
1 |
ctaaaatgaacctatgtcaacaaaaaactatggcactcaagtatttc |
47 |
Q |
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| T |
23396017 |
ctaaaatgaacctatgtcaccaaaaaactatggcacccaagtatttc |
23396063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39973065 - 39973114
Alignment:
| Q |
1 |
ctaaaatgaacctatgtcaacaaaaaactatggcactcaagtatttcccc |
50 |
Q |
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| T |
39973065 |
ctaaaatgaacctatatcaccaaaaaactatggcacccaagtatttcccc |
39973114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 45615587 - 45615642
Alignment:
| Q |
74 |
ttttagtaacagaaactcgttttattattcaaattaacacaactaatcattttctt |
129 |
Q |
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| T |
45615587 |
ttttagtaaatgaaactccttttataattaaaattaacacagctaatcattttctt |
45615642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 762208 - 762273
Alignment:
| Q |
62 |
ttaataagagtgttttagtaacagaaactcgttttattattcaaattaacacaactaatcattttc |
127 |
Q |
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| T |
762208 |
ttaataagtgtgttttagtaaatgtaacacattttatcattaaaattaacactactaatcattttc |
762273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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