View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11882_low_32 (Length: 215)
Name: NF11882_low_32
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 50555961 - 50555776
Alignment:
| Q |
12 |
cataggaacatttattcattgacctggaagcttaaatgtgcataaaatttaagcatgttgtctgtaagattattatcatatagcaaccaaaggctatcta |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50555961 |
catatgaacatttattcattgacctggaagcttaaatgtgcataaaatttaagcatgttgtctgtaagattat---catatagcaaccaaaggctatcta |
50555865 |
T |
|
| Q |
112 |
tacacatcattctcgtgtgtatctctaacaatcagtgcatgtcagtgaaatcattttcttttattttagaaattacatcgttttttatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50555864 |
tacacatcattctcgtgtgtatctctaacaatcagtgcatgtcaatgaaatcattttcttttattttagaaattacatcgttttttatt |
50555776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University