View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_4 (Length: 697)
Name: NF11882_low_4
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 43854466 - 43854161
Alignment:
| Q |
16 |
agcaaaggcaaatgcaacatcacctaaagcactgaagaaattgaaaacagttcctgttggagttgtggctttgtagccatatgccacatctggttgaact |
115 |
Q |
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| T |
43854466 |
agcataggcaaatgcaacatcacctaaagcactgaagaaattgaaaacagttcctgttggagttgtggctttgtagccatatgccacatctggttgaact |
43854367 |
T |
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| Q |
116 |
ccctttttcaatgaagccacccatgcaattgttgagtaactacataggacaaatttccaccataaatttagttaaaaattaaattaagaagataaaatat |
215 |
Q |
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| T |
43854366 |
cccttttttaatgaagccacccatgcaattgttgagtaactacataggacaaattt---ccataaatttatttaaaaattaaattaagaagataaaatat |
43854270 |
T |
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| Q |
216 |
gatattaccattgtacttttattttatatattaatttctggactaaagtcaaatggtttaaactttaaaacagaacaatgttctctatatgtgcattttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43854269 |
gatattaccattgtacttttattttatatattaatttctggactaaagtcaaatggtttaaactttaaaacagaacaatgttctctatatgtgcattttt |
43854170 |
T |
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| Q |
316 |
taacaaaaa |
324 |
Q |
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||||||||| |
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| T |
43854169 |
taacaaaaa |
43854161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 363 - 680
Target Start/End: Complemental strand, 43854161 - 43853823
Alignment:
| Q |
363 |
acctaaaacgtcaaattggtcccaatatgtggataacttttattcaattattttgttcaccnnnnnnnnccttaatgaaatatagtaatgaaatattata |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
43854161 |
acctaaaacgtcaaattggtcccaatatgtggataacttttattcaattattttgttcaccaaaaaaaaccttaatgaaatatagtaattaaatattata |
43854062 |
T |
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| Q |
463 |
ttagactttattg---------------------gattgttcttttagttagccttttgagacttgagagattcattcatgccttcactgatgagcttat |
541 |
Q |
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| T |
43854061 |
ttagactttattgtgaaccggtcgtgatgtattggattgttcttttagttagccttttgagacttgagagattcattcatgccttcactgatgagcttat |
43853962 |
T |
|
| Q |
542 |
ataatatagtcatttaaacatgttactcatcaataagagggaaaagtatcataattcttccaagtcttactaaattctctatggatccttcgatcatcca |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43853961 |
ataatatagtcatttaaacatgttactcatcaataagagggaaaagtatcataattcttccaagtcttactaaattctctatggatccttcgatcatcca |
43853862 |
T |
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| Q |
642 |
aggtaaggtacgtgataactatattacaaaggtttctat |
680 |
Q |
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| T |
43853861 |
aggtaaggtacgtgataactatattacaaaggtttctat |
43853823 |
T |
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