View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11882_low_5 (Length: 632)
Name: NF11882_low_5
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 19 - 614
Target Start/End: Complemental strand, 2272436 - 2271841
Alignment:
| Q |
19 |
tcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaagaagactcaaaccattacaagaaccatatcccaatgtagtacaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272436 |
tcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaagaagactcaaaccattacaagaaccatatcccaatgtagtacaattt |
2272337 |
T |
|
| Q |
119 |
gataaactacaagcatagtcaacagcaccagccaaatcaggatgcaaaatacaccactgtatttgaaaacagttgacataaatacaatgttagtgttata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272336 |
gataaactacaagcatagtcaacagcaccagccaaatcaggatgcaaaatacaccactgtatttgaaaacagttgacataaatacaatgttagtgttata |
2272237 |
T |
|
| Q |
219 |
actgtgagaatttaagaagcatatatagtctacatttttcgccaaatcagtacaaagaaacatagtaataacaacctcctaatactcaaatattaatctn |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272236 |
actgtgagaatttaagaagcatatatagtctacatttttagccaaatcagtacaaagaaacatagtaataacaacctcctaatactcaaatattaatctc |
2272137 |
T |
|
| Q |
319 |
nnnnnnnnnnnnnnnnnnnnnagaattgcaggacaattggcttcagggagcaaaaataagcccaaaactagtttgcaaaaaatcatagacgaccgagaac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272136 |
cccaaccctccccccacccccagaattgcaggacaattggcttcagggagcaaaaataagcccaaaactagtttgcaaaaaatcatagacgaccgagaac |
2272037 |
T |
|
| Q |
419 |
accaggaagcagccctcatcccataaaatcaaaccagaaacgcaggaagccagtaaatacaaaagcattacataccacattatttttgcaccgattctaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272036 |
accaggaagcagccctcatcccataaaatcaaaccagaaacgcaggaagccagtaaatacaaaagcattacataccacattatttttgcaccgattctaa |
2271937 |
T |
|
| Q |
519 |
acttgagataataagtcattacttaccacattacaccaacattgtaactactttaattatgaacattttagttggtgtaaaatcccctctgtagaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2271936 |
acttgagataataagtcattacttaccacattacaccaacattgtaactactttaattatgaacattttagttggtgtaaaatcccctctgtagaa |
2271841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 46353861 - 46353776
Alignment:
| Q |
73 |
aagactcaaaccattacaagaa---ccatatcccaatgtagtacaatttgataaactacaagcatagtcaacagcaccagccaaat |
155 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||||||| |||||| ||||| ||||| |||| | ||||||||||| |
|
|
| T |
46353861 |
aagactcaaaccattacaagaagatccatatcctaatgcagtacaatctgataagctacatgcataatcaatactaccagccaaat |
46353776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 46353926 - 46353872
Alignment:
| Q |
20 |
caattccaatcctttctgattattcacttgacaatacatattaaatgcacaagaag |
75 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
46353926 |
caatcccaatcctt-ctgattatgcacttgataatacatattaaatgcataagaag |
46353872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University