View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_6 (Length: 617)
Name: NF11882_low_6
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 55 - 417
Target Start/End: Complemental strand, 35019234 - 35018872
Alignment:
| Q |
55 |
attaattagcacctattcatcattgtattagttgcctaaggttatccacatttcttaaaaaataaagttggctaaatggtcaaatccttataa------- |
147 |
Q |
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| T |
35019234 |
attaattagcacctattcatcattgtattagttgcctaaggttatccacatttcttaaaaaataaagttggctaaatggtcaaatccttataaattataa |
35019135 |
T |
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| Q |
148 |
tgctaacttaaaggcaaaatgtgaacaagttatggatttatgatgtttatatattcacgttgcatgtcaagctatatgaactcaatttgtattacttaaa |
247 |
Q |
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| T |
35019134 |
tgctaacctaaaggcaaaatgtgaacaagttatggatttatgatgttcatatattcacgttgcatgtcaagctatatgaactca-tttgtattacttaaa |
35019036 |
T |
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| Q |
248 |
tataaagtagctttcagaaagaaagnnnnnnngacatcatacatctttgtatttatttattctattcatttttgtcatacgatattttttagcataagtg |
347 |
Q |
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| T |
35019035 |
tataaagtagctttcaggaaaaaa-------agacatcatacatctttgtatttatttattctattcatttttgtcatacgatattttttagcataagtg |
35018943 |
T |
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| Q |
348 |
gaatgatatttgatgttactcttgcttcatgtttcaatcaagaacgaacacaggtcgctg-ttggtcttaa |
417 |
Q |
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| T |
35018942 |
gaatgatatttgatgttactcttgcttcatgtttcaatcaagaacgaacacaagtcgttgtttggtcttaa |
35018872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 510 - 617
Target Start/End: Complemental strand, 35018833 - 35018726
Alignment:
| Q |
510 |
cattatataataaaattttccattagaacttttgttagtaatagtataccattattactgagacatattaaagcttatgatgttgacttttggaagggtt |
609 |
Q |
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| T |
35018833 |
cattaaataataaaattttccatgagaacttttgttagtaatagtataccattattactgagacatattaaagctaatgatgttgacttttggaagggtt |
35018734 |
T |
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| Q |
610 |
gtcatgtt |
617 |
Q |
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| T |
35018733 |
gtcatgtt |
35018726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 327 - 408
Target Start/End: Complemental strand, 35041183 - 35041100
Alignment:
| Q |
327 |
cgatattttttagcataagtggaatgatat-ttgatgtt-actcttgcttcatgtttcaatcaagaacgaacacaggtcgctgt |
408 |
Q |
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| T |
35041183 |
cgataatttttagcataggtggaatgatgtattgatgttcactcttgcttcttgtttcaatcaagaacgaacacaagtcgctgt |
35041100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 517
Target Start/End: Complemental strand, 35018874 - 35018840
Alignment:
| Q |
483 |
taaaatatgaatgaatatacttcatcacattatat |
517 |
Q |
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| T |
35018874 |
taaaatatgaatgaatatacttcatcacattatat |
35018840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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