View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_low_7 (Length: 605)
Name: NF11882_low_7
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_low_7 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 11118764 - 11119368
Alignment:
| Q |
1 |
ctgcatccattaacaatcaaataagnnnnnnnaaaagtaattaaattttgatgaggaattgtttgaactaggattcaaactcgaattcttccgnnnnnnn |
100 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11118764 |
ctgcatccattaacactcaaataagtatttttaaaagtaattaaatcttgatgaggaattgtttgaactaggattcaaactcgaattcttccaaaaaaaa |
11118863 |
T |
|
| Q |
101 |
tgtgtatcttactagatcttattaatccctagagctatatagcacatgatgtaggagtatatgatttacttgaatgcttcaatttcaggtgcccatacat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11118864 |
tgtgtatcttactagatcttattaatccctagagctatatagcacatgatgtaggagtatatgatttacttgaatggttcaatttcaggtgcccatacat |
11118963 |
T |
|
| Q |
201 |
taggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaactcttgacccaacatacttaaaacagtt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11118964 |
taggaagagcacgttgtcttttcatacttgatcgattatacgacttcgacaatactggcaaacctgatccaactcttgacccaacatacttaaaacagtt |
11119063 |
T |
|
| Q |
301 |
gcaaaaacaatgtcctcaaaatggaccttgaaataacgttgtcaatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
11119064 |
gcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaattttgatccaacaactcccgataaattcgacaagaactactacaacaatcttcaa |
11119163 |
T |
|
| Q |
401 |
ggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttt |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119164 |
ggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttt |
11119263 |
T |
|
| Q |
501 |
tcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaa |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119264 |
tcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaa |
11119363 |
T |
|
| Q |
601 |
gaaat |
605 |
Q |
| |
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||||| |
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| T |
11119364 |
gaaat |
11119368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 177 - 605
Target Start/End: Original strand, 11111169 - 11111597
Alignment:
| Q |
177 |
cttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaactct |
276 |
Q |
| |
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|||||| ||||||||| |||||||| || ||||||||||| |||||||| ||||||||||||||| ||||| | |||||||||||||| ||||||||||| |
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| T |
11111169 |
cttcaacttcaggtgctcatacatttgggagagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactct |
11111268 |
T |
|
| Q |
277 |
tgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggaccttgaaataacgttgtcaatttcgatccaacaactcctgataaattagac |
376 |
Q |
| |
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||| ||||||||||| ||||||||| ||| ||||| ||||| |||||| || |||||||| ||| |||||||| ||||| |||||||||| ||| ||| |
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| T |
11111269 |
tgatacaacatacttacaacagttgcgaaaccaatgccctcagaatggaactggaaataaccgtgttaatttcgacccaacgactcctgatacattggac |
11111368 |
T |
|
| Q |
377 |
aagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaaca |
476 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11111369 |
aagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtgcagataccattagcattgtcaaca |
11111468 |
T |
|
| Q |
477 |
actttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattag |
576 |
Q |
| |
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||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
11111469 |
gctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattag |
11111568 |
T |
|
| Q |
577 |
aaagcagtgcaattttgttaacaagaaat |
605 |
Q |
| |
|
||| || ||||||||| |||||||||||| |
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| T |
11111569 |
aaaacaatgcaattttattaacaagaaat |
11111597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 155 - 605
Target Start/End: Complemental strand, 10793649 - 10793197
Alignment:
| Q |
155 |
gagtatatgatttacttgaatgcttcaattt--caggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaa |
252 |
Q |
| |
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||||||||||||||||| |||||| ||| | ||||||| || ||||| || |||||||||||| ||| | |||||||||||||| ||||| || |
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| T |
10793649 |
gagtatatgatttacttatatgcttgaatattccaggtgcacacacatttgggagagcacgttgttctttattcgttgatcgattatacaacttcagcaa |
10793550 |
T |
|
| Q |
253 |
tactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggaccttgaaataacgttgtcaatttcgat |
352 |
Q |
| |
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||||||| ||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||| |||||||| ||| |||||||| |
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| T |
10793549 |
tactggcgaacctgatccaactcttgatacaacgtacttaaaacaattgcaaaacgaatgtcctcaaaatggacctggaaataaccgtgtaaatttcgac |
10793450 |
T |
|
| Q |
353 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
452 |
Q |
| |
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| T |
10793449 |
ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg |
10793350 |
T |
|
| Q |
453 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
552 |
Q |
| |
|
||||||||| ||||||||| || ||||||| || ||||||| || |||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |
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| T |
10793349 |
cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct |
10793250 |
T |
|
| Q |
553 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaat |
605 |
Q |
| |
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||| ||||||||||||||||| || || || ||||||||||||||||| |||| |
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|
| T |
10793249 |
taccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaat |
10793197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 343 - 598
Target Start/End: Original strand, 11156587 - 11156842
Alignment:
| Q |
343 |
caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctca |
442 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| ||||||||| |
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| T |
11156587 |
caatttcgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctca |
11156686 |
T |
|
| Q |
443 |
acaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaata |
542 |
Q |
| |
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||| | ||||||||||||||||||||||||||||| || | | | | ||||| | |||||| ||| ||||| | |||||||||||||||| |||| |
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|
| T |
11156687 |
acatccggtgcagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaata |
11156786 |
T |
|
| Q |
543 |
ttggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaac |
598 |
Q |
| |
|
|||| ||||| || || | ||||||||| |||||||| || ||||| ||||||||| |
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|
| T |
11156787 |
ttggtgtgctaacagggacgaaaggagagattagaaaacaatgcaactttgttaac |
11156842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 174 - 597
Target Start/End: Original strand, 11137476 - 11137899
Alignment:
| Q |
174 |
atgcttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaac |
273 |
Q |
| |
|
||||||||| | |||||| |||||||| |||||||||||||| |||||| ||||||||||||| ||||| | ||| || |||||||||||||| |
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|
| T |
11137476 |
atgcttcaaatgtaggtgctcatacattcggaagagcacgttgcactttcatcactgatcgattatacaacttcagcagtacaggaaaacctgatccaac |
11137575 |
T |
|
| Q |
274 |
tcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggaccttgaaataacgttgtcaatttcgatccaacaactcctgataaatta |
373 |
Q |
| |
|
|||| | |||| || ||| || | || | ||| ||||||| | |||||| ||||||| | | |||||| || ||||| |||||||||||||| |
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|
| T |
11137576 |
tcttaatacaacttatttacaagaattacgtaaaatatgtcctaatggtggaccaccaaataacctcgccaattttgacccaacgactcctgataaattt |
11137675 |
T |
|
| Q |
374 |
gacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtca |
473 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| ||| | ||||| ||||||||||||||||||| |
|
|
| T |
11137676 |
gacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtgctgataccattagcattgtca |
11137775 |
T |
|
| Q |
474 |
acaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaat |
573 |
Q |
| |
|
|||| || | || |||||| |||||| | | |||| | | ||||||||||||||||||||||| ||||| || || || |||||||| || |
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|
| T |
11137776 |
acaagttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagat |
11137875 |
T |
|
| Q |
574 |
tagaaagcagtgcaattttgttaa |
597 |
Q |
| |
|
|||||| || |||||||||||||| |
|
|
| T |
11137876 |
tagaaaacattgcaattttgttaa |
11137899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 343 - 597
Target Start/End: Original strand, 11149919 - 11150173
Alignment:
| Q |
343 |
caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctca |
442 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||| ||||||||| |
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|
| T |
11149919 |
caatttcgatccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctca |
11150018 |
T |
|
| Q |
443 |
acaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaata |
542 |
Q |
| |
|
||| | ||| ||||||||||||||||||||||||| |||| || | | ||||| | ||| || ||| ||||| | | ||||| |||||||| |||| |
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|
| T |
11150019 |
acatctggttcagataccattagcattgtcaacaaatttgcaaccgatcaaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaata |
11150118 |
T |
|
| Q |
543 |
ttggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaa |
597 |
Q |
| |
|
|||| ||| | ||||| || ||||||| |||||||| || ||||| |||||||| |
|
|
| T |
11150119 |
ttggtgtgttaactgggaaacaaggagagattagaaaacaatgcaactttgttaa |
11150173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 350 - 482
Target Start/End: Original strand, 11145957 - 11146089
Alignment:
| Q |
350 |
gatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgg |
449 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| | | |
|
|
| T |
11145957 |
gatccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctg |
11146056 |
T |
|
| Q |
450 |
gtgcagataccattagcattgtcaacaactttg |
482 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
11146057 |
gtgctgataccattagcattgtcaacaactttg |
11146089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 463
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
| Q |
405 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt |
463 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
11183671 |
aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt |
11183613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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