View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11883_high_1 (Length: 493)
Name: NF11883_high_1
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Complemental strand, 52002003 - 52001546
Alignment:
| Q |
16 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002003 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
52001904 |
T |
|
| Q |
116 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001903 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
52001804 |
T |
|
| Q |
216 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgtggaacatgaaattgatgatgatgattctccaactcctttctctaaagcagtcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52001803 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgtggaacatgaagttgatga---tgattctccaactcctttctctaaagcagtcaa |
52001707 |
T |
|
| Q |
316 |
agctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgagggga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001706 |
agctattcaagaacgaattactaaaagcaacaaaagggggtttgtcgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgagggga |
52001607 |
T |
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| Q |
416 |
agattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
476 |
Q |
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| T |
52001606 |
agattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
52001546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 476
Target Start/End: Complemental strand, 52011639 - 52011411
Alignment:
| Q |
251 |
gatgatgatgtggaacatgaaattgatgatgatgat---tctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaaca |
347 |
Q |
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||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||| ||||| ||||||||||||| ||||||||| | |||||||| | |
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| T |
52011639 |
gatgatgatgtggaacatgaagttgatgttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaaga |
52011540 |
T |
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| Q |
348 |
aaagggggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtc |
447 |
Q |
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| T |
52011539 |
aaaaaggggttgttaaggaatcctttatttgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtc |
52011440 |
T |
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| Q |
448 |
tcttaaaattcttgccaatcatgttgatg |
476 |
Q |
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| T |
52011439 |
tcttaaaattcttgctaaccatgctgatg |
52011411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 252 - 476
Target Start/End: Original strand, 51987866 - 51988087
Alignment:
| Q |
252 |
atgatgatgtggaacatgaaattgatgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaag |
351 |
Q |
| |
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|||||||| |||||||||||| |||||||| | |||||||| ||||||||||||||| | ||||||||||||||| |||| | ||||||| |||| |
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| T |
51987866 |
atgatgatatggaacatgaaactgatgatggt---tctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaa |
51987962 |
T |
|
| Q |
352 |
ggggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctctt |
451 |
Q |
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||| ||||||||||||| |||| |||| ||||||| | |||| |||||||| | | | |||| || ||||||||||| ||| |||| ||| ||| |
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| T |
51987963 |
agggcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgtgcctt |
51988062 |
T |
|
| Q |
452 |
aaaattcttgccaatcatgttgatg |
476 |
Q |
| |
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|| |||||||| || |||| ||||| |
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| T |
51988063 |
aacattcttgcgaaccatgctgatg |
51988087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 52011878 - 52011785
Alignment:
| Q |
30 |
atcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcga |
123 |
Q |
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||||||||||||||||| |||||||||||||| | ||| ||| ||||| |||| |||| |||| || |||||||||||| |||||||||| |
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| T |
52011878 |
atcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcga |
52011785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 277 - 476
Target Start/End: Complemental strand, 11749419 - 11749220
Alignment:
| Q |
277 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
376 |
Q |
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|||||||| |||||||||||||||||| || || ||||||||||||||||||||||| | |||| ||| |||| ||||||||||||||||||||||| | |
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| T |
11749419 |
tgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcccttatt |
11749320 |
T |
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| Q |
377 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
476 |
Q |
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| T |
11749319 |
tgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaatcatgttgatg |
11749220 |
T |
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