View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11883_low_14 (Length: 245)
Name: NF11883_low_14
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 41566523 - 41566747
Alignment:
| Q |
1 |
tgtttataatattctaatcatatttcatcatcataatatttcttcttaaaatttatgcacattatatatacataagattgaatttgtctaattgtgtcat |
100 |
Q |
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| T |
41566523 |
tgtttataatattctaatcatatttcatcatcataatatttcttcttaaagtttatgcacattatatatacatacgattgaatttgtctaattgtgtcat |
41566622 |
T |
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| Q |
101 |
ttatgtatagttataaaattcatcattaatcaaacaccaagaaatatgtatcaataaaaacattaaaggaagataacctgtatgttccagaattgagtat |
200 |
Q |
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| T |
41566623 |
ttatgtatagttataaaattcatcattaatcaaacaccaagaaatatgtatcaataaaaacattaaaggaagataacctgtatgttccagaattgagtat |
41566722 |
T |
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| Q |
201 |
gataagggtggcatgagaacttgat |
225 |
Q |
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| T |
41566723 |
gataagggtggcatgagaacttgat |
41566747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 41435037 - 41434943
Alignment:
| Q |
125 |
attaatcaaacaccaagaaatatgtatcaataaaaacattaaaggaagataacctgtatgttccagaattgagtatgataagggtggcatgagaac |
220 |
Q |
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| T |
41435037 |
attaatcaaataccaagtaatatgtatcaataaaaacataagag-aagataacctgtatgttccagaattgagtatgataagggtggcatgagaac |
41434943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 41435270 - 41435187
Alignment:
| Q |
1 |
tgtttataatattctaatcatatttcatcatcataatatttcttcttaaaatttatgcacattatatatacataagattgaattt |
85 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||||||| |
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| T |
41435270 |
tgtttataatattctaatcatatttcatcatcataa-aaaaaatcttaaaatttatgcacaccttatatacatacgattgaattt |
41435187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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