View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11883_low_15 (Length: 244)
Name: NF11883_low_15
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18633443 - 18633216
Alignment:
| Q |
1 |
cataacaaatggaccgatataatttttgtcgatcatcttgggagaaagagtggaaaatatagttggattttaagagtaactactaattttgaaactacag |
100 |
Q |
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| T |
18633443 |
cataacaaattgaccgatataatttttgccgatcatcttgggagaaagagtgaaaaatgtagttggattttaagagtaactactaattttgaaactacag |
18633344 |
T |
|
| Q |
101 |
taggcaaacatggagaagatataaaacagattataatcttgcatcaaaggctcccataaaaatgcatccattgtgtatacaaatgcttctaactatgttt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18633343 |
tagacaaacatggagaagatataaaacagattataatcttgcatcaaaggctcccataaaaatgcattcattgtgtatacaaatgcttctaactatgttt |
18633244 |
T |
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| Q |
201 |
ctcaagtatcagttccataaagttcctg |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
18633243 |
ctcaagtatcagttccataaagttcctg |
18633216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18638658 - 18638881
Alignment:
| Q |
1 |
cataacaaatggaccgatataatttttgtcgatcatcttgggagaaagagtggaaaatatagttggattttaagagtaactactaattttgaaacta--- |
97 |
Q |
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|||||||||||| |||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
18638658 |
cataacaaatgggccgatataatttgtggcgatcatcctgggagaaagaatggaaaatataattggattttaagagtaactactaatttcaaaactaaga |
18638757 |
T |
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| Q |
98 |
cagtaggcaaacatggagaagatataaaacagatta-taatcttgcatcaaaggctcccataaaaatgcatccattgtgtatacaaatgcttctaactat |
196 |
Q |
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|||||| ||||||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
18638758 |
cagtagacaaacatggagcagatataaaacagataaataattttgcatcaaaggctcccataaaaatgtatcctttgtgcatacaaatgcttctaactat |
18638857 |
T |
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| Q |
197 |
gtttctcaagtatcagttccataa |
220 |
Q |
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|||||||||||||||||||||||| |
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| T |
18638858 |
gtttctcaagtatcagttccataa |
18638881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1844466 - 1844693
Alignment:
| Q |
1 |
cataacaaatggaccgatataatttttgtcgatcatcttgggagaaagagtggaaaatatagttggattttaagagtaactactaattttgaaactacag |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1844466 |
cataacaaatggaccgatataatttttgctgatcatcttgggagaaagagtggaaaatatagttggattttaagaataactactaattttgaaactacag |
1844565 |
T |
|
| Q |
101 |
taggcaaacatggagaagatataaaacagattataatcttgcatcaaaggctcccataaaaatgcatccattgtgtatacaaatgcttctaactatgttt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1844566 |
tagacaaacatggagaagatataaaacagattataatattgcatcaaaggctcccataaaaatgcatccattgtgtatacaaatgtttctaactatgttt |
1844665 |
T |
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| Q |
201 |
ctcaagtatcagttccataaagttcctg |
228 |
Q |
| |
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||||||||||||||| |||||||||||| |
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| T |
1844666 |
ctcaagtatcagttctataaagttcctg |
1844693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1838769 - 1838546
Alignment:
| Q |
1 |
cataacaaatggaccgatataatttttgtcgatcatcttgggagaaagagtggaaaatatagttggattttaagagtaactactaattttgaaacta--- |
97 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |
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| T |
1838769 |
cataacaaatgggccgatataatttgtggcgatcatcctgggagaaagagtggaaaatataattggattttaagagtagctactaatttcaaaactaaga |
1838670 |
T |
|
| Q |
98 |
cagtaggcaaacatggagaagatataaaacagatta-taatcttgcatcaaaggctcccataaaaatgcatccattgtgtatacaaatgcttctaactat |
196 |
Q |
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|||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1838669 |
cagtagacaaacatggagcagatataaaacagataagtaattttgcatcaaaggctcccataaaaatgcatccattgtgcatacaaatgcttctaactat |
1838570 |
T |
|
| Q |
197 |
gtttctcaagtatcagttccataa |
220 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
1838569 |
gtttctcaagtatcagttccataa |
1838546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 41381746 - 41381977
Alignment:
| Q |
1 |
cataacaaatggaccgatataatttttgtcgatcatcttgggagaaagagtggaaaatatagttggattttaagagtaactactaattttgaaacta--- |
97 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
41381746 |
cataacaaatgggccgatataatttgtgccgatcatcctgggagaaagagtggaaaatatcgttggattttaagagtaactactaatttcgaaactagga |
41381845 |
T |
|
| Q |
98 |
cagtaggcaaacatggagaagatataaaacagatta-taatcttgcatcaaaggctcccataaaaatgcatccattgtgtatacaaatgcttctaactat |
196 |
Q |
| |
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||||| ||||||||||| ||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
41381846 |
cagtaaacaaacatggagcagatataaaccagataaataatcttgcatcaaaggatcccataaaaatgcatccattgtgcatacaaacgcttctaactat |
41381945 |
T |
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| Q |
197 |
gtttctcaagtatcagttccataaagttcctg |
228 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |
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| T |
41381946 |
gtctctcaagtatcagttccataaagttcctg |
41381977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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