View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11883_low_16 (Length: 237)
Name: NF11883_low_16
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 47283602 - 47283370
Alignment:
| Q |
1 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatctactgcatttacgaaggtgaaatggaatcaagtgacggattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47283602 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaaggtgaaatggaatcaagtgacggattg |
47283503 |
T |
|
| Q |
101 |
cagctatgtgagaaagtgtaaagaagaaagattgatgtactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47283502 |
cagctatgtgagaaagtgtaaagaagaaagattgatggactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattc |
47283403 |
T |
|
| Q |
201 |
acgatggttgcaagtaatgcgtggagggtctct |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
47283402 |
acgatggttgcaagtaatgcgtggagggtctct |
47283370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47279009 - 47278773
Alignment:
| Q |
1 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatctactgcatttacgaaggtgaaatggaatcaagtgacggattg |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| || |
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| T |
47279009 |
tctaactgcaatgcttttgtacggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaaggtgaaatggaatcaaacgacgaatct |
47278910 |
T |
|
| Q |
101 |
cagctatgtgagaaagtgtaaagaagaaagattgatgtactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattc |
200 |
Q |
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|||||||| ||| ||| |||||||||||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
47278909 |
cagctatgcgagtaagcgtaaagaagaaagagtgatggactatggtagcagcaacatcttcttccttgttgatatttgacgaaagtatttgttcgtattc |
47278810 |
T |
|
| Q |
201 |
acgatggttgcaagtaatgcgtggagggtctcttgcc |
237 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||| |
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| T |
47278809 |
atgatggttgcaagtaacacgtggagggtctcttgcc |
47278773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 47292611 - 47292844
Alignment:
| Q |
1 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatctactgcatttacgaaggtgaaatggaatcaagtgacggattg |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| | |||||| ||||||||||||||||| |||| |||| | | |
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| T |
47292611 |
tctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcaaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagcg |
47292710 |
T |
|
| Q |
101 |
cagctatgtgagaaagtgtaaagaagaaagattgatgtactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattc |
200 |
Q |
| |
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||||||||| |||| | |||||||||||||| |||| |||| || ||||| |||||||||||| || |||||| || || ||||||| ||||| |
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| T |
47292711 |
cagctatgtcagaagctctaaagaagaaagatcgatgaacta---gagaagcagtatcttcttccttaatggtatttggcgaaaaaatttgtttgtattc |
47292807 |
T |
|
| Q |
201 |
acgatggttgcaagtaatgcgtggagggtctcttgcc |
237 |
Q |
| |
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| |||||||||| |||||||||||||||||||||||| |
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| T |
47292808 |
aagatggttgcatgtaatgcgtggagggtctcttgcc |
47292844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 47299218 - 47299451
Alignment:
| Q |
1 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatctactgcatttacgaaggtgaaatggaatcaagtgacggattg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| | ||||||||| ||| | |||||| ||||||||||||||||| |||| |||| | || |
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| T |
47299218 |
tctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtg |
47299317 |
T |
|
| Q |
101 |
cagctatgtgagaaagtgtaaagaagaaagattgatgtactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattc |
200 |
Q |
| |
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||||||| |||| | ||||||||||||||||||| |||| || ||||| ||||| |||||| | |||||| || ||| |||||||| ||||| |
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| T |
47299318 |
tggctatgtcagaagctctaaagaagaaagattgatggacta---gagaagcagtatctttttccttaattgtatttggcgaaagaatttgttcgtattc |
47299414 |
T |
|
| Q |
201 |
acgatggttgcaagtaatgcgtggagggtctcttgcc |
237 |
Q |
| |
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| ||||||||| |||||||||||||||||||||||| |
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| T |
47299415 |
aaaatggttgcatgtaatgcgtggagggtctcttgcc |
47299451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47242733 - 47242493
Alignment:
| Q |
1 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatc----tactgcatttacgaaggtgaaatggaatcaagtgacgg |
96 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| || |||| ||||||||||||||| || |||| | | ||||||||| ||||| |||| ||| |
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| T |
47242733 |
tctatctgcaatgcttttgtgcggcagcaccaataatatgcagtgataagatcaaattaatgtagtgcaatgatgaaggtgaattggaaccaagcaacga |
47242634 |
T |
|
| Q |
97 |
attgcagctatgtgagaaagtgtaaagaagaaagattgatgtactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcat |
196 |
Q |
| |
|
|| |||||||||||| | |||| ||||||||||||||||| |||| | |||||| | | ||||||| ||| | |||||| || |||||||||||| | |
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| T |
47242633 |
atcacagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgtaggtatttggcgaaagtatttgttcgt |
47242534 |
T |
|
| Q |
197 |
attcacgatggttgcaagtaatgcgtggagggtctcttgcc |
237 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |
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| T |
47242533 |
attcacgatggttgcatgtaatgtatggagggtctcttgcc |
47242493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47256857 - 47256621
Alignment:
| Q |
1 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatctactgcatttacgaaggtgaaatggaatcaagtgacggattg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||||| ||||||||||| || | |||| | |||||||| ||||| |||| |||| || | |
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| T |
47256857 |
tctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcaccgagaaaggtgaagtggaaccaagcgacgaatcg |
47256758 |
T |
|
| Q |
101 |
cagctatgtgagaaagtgtaaagaagaaagattgatgtactatggtagtagcagcatcttcttccttgttga---tatttgacgtaagtatttgttcata |
197 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||| |||||| | |||||||||||| || |||||| || ||||||||||||||| |
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| T |
47256757 |
cagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagta---tcttcttccttgatgtacgtatttggcggaagtatttgttcata |
47256661 |
T |
|
| Q |
198 |
ttcacgatggttgcaagtaatgcgtggagggtctcttgcc |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
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| T |
47256660 |
ttcacgatggttgcaagtaatgtatggagggtctcttgcc |
47256621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47267637 - 47267404
Alignment:
| Q |
1 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatctactgcatttacgaaggtgaaatggaatcaagtgacggattg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| | | || | |||||||||||||||| |||| |||| | |
|
|
| T |
47267637 |
tctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagca |
47267538 |
T |
|
| Q |
101 |
cagctatgtgagaaagtgtaaagaagaaagattgatgtactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattc |
200 |
Q |
| |
|
|| | |||| ||| ||||||||||||||||||| |||| ||| || | ||||||||||||| | ||||||||| || |||||||| ||||| |
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|
| T |
47267537 |
caacaatgtctgaagtcctaaagaagaaagattgatgaactagggttgt---ggtatcttcttccttgattgtatttgacgaaaaaatttgttcgtattc |
47267441 |
T |
|
| Q |
201 |
acgatggttgcaagtaatgcgtggagggtctcttgcc |
237 |
Q |
| |
|
| |||||||||| |||||| |||| |||||||||||| |
|
|
| T |
47267440 |
atgatggttgcatgtaatgtgtggtgggtctcttgcc |
47267404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32731400 - 32731164
Alignment:
| Q |
1 |
tctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatctactgcatttacgaaggtgaaatggaatcaagtgacggattg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||| || |||| | | ||||||||| ||||| |||| ||| || | |
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|
| T |
32731400 |
tctatctgcaatgcttttgtgcggcagcaccaataacatgcactgataagatcaaatgtagtgcaatgatgaaggtgaattggaaccaagcaacgaatcg |
32731301 |
T |
|
| Q |
101 |
cagctatgtgagaaagtgtaaagaagaaagattgatgtactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattc |
200 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||| |||| | |||||| | | ||||||| ||| | |||||| || |||||||||||| ||||| |
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|
| T |
32731300 |
cagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgtaggtatttggcgaaagtatttgttcgtattc |
32731201 |
T |
|
| Q |
201 |
acgatggttgcaagtaatgcgtggagggtctcttgcc |
237 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
32731200 |
acgatggttgcatgtaatacatggagggtctcttgcc |
32731164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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