View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11883_low_17 (Length: 227)
Name: NF11883_low_17
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_low_17 |
 | |
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| [»] chr1 (16 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 30368441 - 30368228
Alignment:
| Q |
14 |
ggacatcagaagccctaggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaact |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30368441 |
ggacaacagaagccctaggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaact |
30368342 |
T |
|
| Q |
114 |
aagatctttacccatacaacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30368341 |
aagatctttacccatacaacttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgatacccatctctca |
30368242 |
T |
|
| Q |
214 |
ggcttaaattccat |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30368241 |
ggcttaaattccat |
30368228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 13070492 - 13070296
Alignment:
| Q |
31 |
ggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatac |
130 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||| || |
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|
| T |
13070492 |
ggggttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaac |
13070393 |
T |
|
| Q |
131 |
aacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattccat |
227 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
13070392 |
aacttctcggacctgtattgaaagctatgaacttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccat |
13070296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 13204335 - 13204531
Alignment:
| Q |
31 |
ggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatac |
130 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||| ||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||| || |
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|
| T |
13204335 |
ggggttacagggtgaccttccactatctttatgtgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaac |
13204434 |
T |
|
| Q |
131 |
aacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattccat |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
13204435 |
aacttctaggacctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccat |
13204531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 13100877 - 13101072
Alignment:
| Q |
31 |
ggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatac |
130 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||| ||| |||| ||| |||||||||| |
|
|
| T |
13100877 |
ggggttatagggtgaccttccaccacctgtatgtgaaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatac |
13100976 |
T |
|
| Q |
131 |
aacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattccat |
227 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
13100977 |
aacttctaggtcctg-attgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccat |
13101072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 13094275 - 13094471
Alignment:
| Q |
31 |
ggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatac |
130 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
13094275 |
ggggttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatac |
13094374 |
T |
|
| Q |
131 |
aacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattccat |
227 |
Q |
| |
|
|| |||| |||||||| |||||||||||||||||| |||||||||||| |||||| | ||| ||||| |||| |||||||||||||||||||||||| |
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|
| T |
13094375 |
aaattctgggtcctgtgttgaaagctatgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccat |
13094471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 13129704 - 13129900
Alignment:
| Q |
31 |
ggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatac |
130 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
13129704 |
ggggttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatac |
13129803 |
T |
|
| Q |
131 |
aacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattccat |
227 |
Q |
| |
|
|| |||| |||||||| |||||||||| ||||||| |||||||||||| |||||| | ||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
13129804 |
aaattctgggtcctgtgttgaaagctacgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccat |
13129900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 13007076 - 13007272
Alignment:
| Q |
31 |
ggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatac |
130 |
Q |
| |
|
||||||| |||||||||| |||| |||| |||||||||||| |||||| || ||||| |||||||||||||||| ||| |||| ||| || ||||||| |
|
|
| T |
13007076 |
ggggttatagggtgacctgccaccacctttatgtgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatac |
13007175 |
T |
|
| Q |
131 |
aacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattccat |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13007176 |
aacttctaggacctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccat |
13007272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 13161397 - 13161593
Alignment:
| Q |
31 |
ggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatac |
130 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
13161397 |
ggggttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatac |
13161496 |
T |
|
| Q |
131 |
aacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattccat |
227 |
Q |
| |
|
|| |||| |||||||| ||||||| |||||||||| |||| ||||||| |||||| | ||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
13161497 |
aaattctgggtcctgtgttgaaagatatgaacttgtaagaaggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccat |
13161593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 13244834 - 13244642
Alignment:
| Q |
34 |
gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||| |||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
13244834 |
gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaac |
13244735 |
T |
|
| Q |
134 |
ttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattcca |
226 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||| |||||||||||||| |||||| |||||| |||||| |||||||||||||||| |
|
|
| T |
13244734 |
ttctaggacctgcattgaaagctatgaacttgtaagacggtacatttataatccctcctctagctgatatccatctttcaggcttaaattcca |
13244642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 13271457 - 13271657
Alignment:
| Q |
26 |
ccctaggggttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacc |
125 |
Q |
| |
|
||||||| || |||| ||||||||||| || |||||||||||||||||||| | | |||||||||||| |||||||||| || |||| |||||| || |
|
|
| T |
13271457 |
ccctaggagtaacagactgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttccc |
13271556 |
T |
|
| Q |
126 |
catacaacttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattcc |
225 |
Q |
| |
|
| ||| |||||||| |||| |||||| |||||||||||| |||||||||||| |||||| |||||| | ||||||| |||||||||||||||||| ||| |
|
|
| T |
13271557 |
aagacagcttctaggacctgcattgaatgctatgaacttgtaagatggtacatgtataatttgtcctttatctgatatccatctctcaggcttaaactcc |
13271656 |
T |
|
| Q |
226 |
a |
226 |
Q |
| |
|
| |
|
|
| T |
13271657 |
a |
13271657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 13085986 - 13086176
Alignment:
| Q |
34 |
gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac |
133 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||||| || | ||||| |
|
|
| T |
13085986 |
gttacagaatgaccttccacaacttgtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaac |
13086085 |
T |
|
| Q |
134 |
ttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattc |
224 |
Q |
| |
|
||| ||| |||| ||| || |||||||||||| |||||||||||| | ||| |||||| | ||||||| ||||||||| ||||||||||| |
|
|
| T |
13086086 |
ttcgaggacctgcattaaatgctatgaacttgcaagatggtacatgcaaaatatgtcctttatctgatatccatctctcgggcttaaattc |
13086176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 19279473 - 19279299
Alignment:
| Q |
42 |
gtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggt |
141 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||| |||| ||| |||||| || | ||| ||||| || |
|
|
| T |
19279473 |
gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga |
19279374 |
T |
|
| Q |
142 |
cctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggc |
216 |
Q |
| |
|
|||| ||| || |||||||||||| | |||||||||| |||||| |||||||| || |||| ||||||||||||| |
|
|
| T |
19279373 |
cctgcattaaacgctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctcaggc |
19279299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 13065526 - 13065333
Alignment:
| Q |
34 |
gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac |
133 |
Q |
| |
|
|||||||| ||||| ||||| | |||||| ||||||||||| | || || ||| |||||||||||| |||||| | | ||||||||||| ||||| |
|
|
| T |
13065526 |
gttacaggatgaccatccactaaatgtatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaac |
13065427 |
T |
|
| Q |
134 |
ttctaggtcctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattccat |
227 |
Q |
| |
|
|||| || |||| ||||||||||||||||||| |||| ||||||| |||||| ||||| || | ||||| |||||||||||||||||||||||| |
|
|
| T |
13065426 |
ttcttggccctgcattgaaagctatgaacttgtaagacggtacatgtataatttgtccgctttttgatatccatctctcaggcttaaattccat |
13065333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 12964180 - 12963996
Alignment:
| Q |
42 |
gtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggt |
141 |
Q |
| |
|
|||||||||||| || | ||||||||||||||| |||| ||| |||||||| ||||||||||| || |||| |||||| || |||||||||||||| |
|
|
| T |
12964180 |
gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga |
12964081 |
T |
|
| Q |
142 |
cctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattcca |
226 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||| || | |||||| | |||||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
12964080 |
cctgcattgaatgctatgaacttataagatggcacttgtataatttctcctctatttgatatccatctttcaggcttaaattcca |
12963996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 13081170 - 13080986
Alignment:
| Q |
42 |
gtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggt |
141 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||| | |||||||||||||| |||||||||| ||||||| |||||| || | ||| ||||| || |
|
|
| T |
13081170 |
gtgaccttccaccacctgaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttgga |
13081071 |
T |
|
| Q |
142 |
cctgtattgaaagctatgaacttggaagatggtacatttataatgtgtcctctctctgatacccatctctcaggcttaaattcca |
226 |
Q |
| |
|
|||| ||| || ||||||||||| |||| || || | |||||| |||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
13081070 |
cctgcattaaacgctatgaacttataagacggcacttgtataatttgtcctctatctgatatccatctctcaggcttaaactcca |
13080986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 13010661 - 13010739
Alignment:
| Q |
43 |
tgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctt |
121 |
Q |
| |
|
||||||||||| || |||||| |||| ||||||||||| ||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
13010661 |
tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcattagaatgaaactaagatctt |
13010739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 31380325 - 31380253
Alignment:
| Q |
93 |
catcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaacttg |
165 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
31380325 |
catcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg |
31380253 |
T |
|
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