View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11883_low_3 (Length: 466)
Name: NF11883_low_3
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 44 - 454
Target Start/End: Complemental strand, 22366225 - 22365804
Alignment:
| Q |
44 |
cataagcagcttctatgaacgccatttcttcttcgctaacaatttcaattggaatattatta---ttgttgaatgaggatgtttcggccatgtttgtgtt |
140 |
Q |
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| T |
22366225 |
cataagctgcttctatgaacgccatttcttcttcgctaacaatttcaattggaatattattaacgttgttggatgaggatgtttcggccatgtttgtgtt |
22366126 |
T |
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| Q |
141 |
ctttcctttgaccaaa-caaaaaacacaatccttgttctaagtgaaaaatgaccgttgaaaatgccgtgtatttttgggtttcaaattgattgttattca |
239 |
Q |
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|||||||||||||||| ||||||| |||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22366125 |
ctttcctttgaccaaaacaaaaaatacaatc-ttgttg-aagtaaaaaatgaccgttgaaaatggcgtgtatttttgggtttcaaattgattgttattca |
22366028 |
T |
|
| Q |
240 |
cttcaccgcacggaagggacactcaatgcttcaacctttttccttattcaagtaaaaagtagaaagaaccaagcttctcctataaacaatcaaacatggc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
22366027 |
cttcaccgcacggaagggacactcaatgcttcaacctttttctttgttcaagtaaaaagaagaaagaaccaagcttctcctgtaaacaatcaaacatggc |
22365928 |
T |
|
| Q |
340 |
cacgagttattgattttttacagggttaaacatgcttttcatc-ctataaatata--------ttaatttttcaggactttatctctgtctacatagaaa |
430 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22365927 |
cacgagttattgattttttagagggttaaatatgcttttcatctctataaatatacaacttttctaatttttcaggactttatctctgtctacatagaaa |
22365828 |
T |
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| Q |
431 |
aatgatccatttttatttatttca |
454 |
Q |
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|||||||||||||||||||||||| |
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| T |
22365827 |
aatgatccatttttatttatttca |
22365804 |
T |
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