View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11883_low_5 (Length: 434)
Name: NF11883_low_5
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 355106 - 355509
Alignment:
| Q |
18 |
aaaactgtaagaaaattgctcaaaattccatagatttgtttaaagagaataaggaaaatactgtcaccaagtctcatcattacggtaagtctaatgttag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355106 |
aaaactgtaagaaaattgctcaaaattccatagatttgtttaaagagaataaggaaaatactgtcaccaagtctcatcattacggtaagtctaatgttag |
355205 |
T |
|
| Q |
118 |
gtttaagcatgttgatagaccctctgaaacagataatcttgctggaagcctgaaaactaagctgaatatgattcatgacacgcatctggataatagaatt |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355206 |
gtttaagcatattgatagaccctctgaaacagataatcttgctggaagcctgaaaactaagctgaatatgattcatgacacgcatctggataatagaatt |
355305 |
T |
|
| Q |
218 |
gatgttatcaagggtagagcaaagttagctgaacaatcaggtgcaatgattggctcggctaagcaatctaaggaggtttcaaccttagcattagattcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355306 |
gatgttatcaagggtagagcaaagttagctgaacaatcaggtgcaatgattggctcggctaagcaatctaaggaggtttcaaccttagcattagattcaa |
355405 |
T |
|
| Q |
318 |
cattgaaatttgaaatctggaattgcagcaggt-aatgctctgttgattttggtgttaatatgcatcatttttctgatattggtgctggcactgcctttg |
416 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
355406 |
cattgaaatttgaaatctggaattgcagcaggtaaatgctctgttgattttggtgttaatatgcatcatttttctgatattggtgctggcactgcctttg |
355505 |
T |
|
| Q |
417 |
atgt |
420 |
Q |
| |
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|||| |
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| T |
355506 |
atgt |
355509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 10581507 - 10581893
Alignment:
| Q |
18 |
aaaactgtaagaaaattgctcaaaattccatagatttgtttaaagagaataaggaaaatactgtcaccaagtctcatcattacggtaagtctaatgttag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| | |
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| T |
10581507 |
aaaactgtaagaaaattgctcaaaattccatggatttgtttaaagataataaggaaaatactgtcaccaagtctcatcatcagggtaagtctaatgttgg |
10581606 |
T |
|
| Q |
118 |
gtttaagcatgttgatagaccctctgaaacagataatcttgctggaagcctgaaaactaagctgaatatgattcatgacacgcatctggataat--agaa |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || ||| |
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| T |
10581607 |
gtttaagcatgttgatagaccctctgagacagataatcttgctggaagcctgaaaactaa-ctgaatatgattcatgacacacatctggattatagagag |
10581705 |
T |
|
| Q |
216 |
ttgatg-ttatcaagggtagagcaaagttagctgaacaatcaggtgcaatgattggctcggctaagcaatctaaggaggtttcaaccttagcattagatt |
314 |
Q |
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|||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10581706 |
ttgatgtttatcaagggtagagaaaagttagttgaacaatcaggtgcaatgattggctcggctaagcaatctaaggaggtttcaaccttagcattagatt |
10581805 |
T |
|
| Q |
315 |
caacattgaaatttgaaatctggaattgcagcaggtaatgctctgttgattttggtgttaatatgcatcatttttctgatattggtgctggcactgcctt |
414 |
Q |
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||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10581806 |
caaca-------ttgaaagctggta-----------aatgctctgttgattttggtgttaatatgcatcatttttctgatattggtgctggtactgccta |
10581887 |
T |
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