View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11883_low_6 (Length: 433)

Name: NF11883_low_6
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11883_low_6
NF11883_low_6
[»] chr2 (11 HSPs)
chr2 (15-415)||(28184114-28184529)
chr2 (15-132)||(27994827-27994945)
chr2 (15-132)||(28081360-28081478)
chr2 (187-239)||(28180087-28180139)
chr2 (89-152)||(28180172-28180235)
chr2 (334-377)||(27985867-27985910)
chr2 (334-377)||(28072398-28072441)
chr2 (71-143)||(27985683-27985756)
chr2 (155-212)||(27994947-27995004)
chr2 (71-143)||(28072214-28072287)
chr2 (155-212)||(28081480-28081537)
[»] chr3 (2 HSPs)
chr3 (29-271)||(24747107-24747347)
chr3 (306-377)||(24747381-24747452)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 415
Target Start/End: Complemental strand, 28184529 - 28184114
Alignment:
Q  15 atgaagcaaatattgaacaaaatagccttagttgttctatattttaaagaattatgcattgatagatgtatctaggatgcaaatctgttcaagttttaga 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28184529 atgaagcaaatattgaacaaaatagcctttgttgttctatattttaaagaattatgcattaatagatgtatctaggatgcaaatctgttcaagttttaga 28184430  T
Q  115 gtttgtgtcatggactcgtggtatatgatctggtaatatttatatactacggtaggtacagacaatagttttcctggttttgtttgtcattactcattca 214  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28184429 gtttgtgtcatggactcgtggtatatgatctggtaataggtatatactacggtaggtacagacaatagttttcctggttttgtttgtcattactcattca 28184330  T
Q  215 ttatcttaatataatacatcttattatttatcaaaattattggggatagttaaaaccaaca---nnnnnnnnnnnnnnnnccaatcatata--ttcattt 309  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||                   ||||| |||||  |||||||    
T  28184329 ttatcttaatataatacatct---tatttatcaaaattattggggatagttaaaaccaacattttttttttcttttttttccaatgatatattttcattt 28184233  T
Q  310 catccgtggtcacttttcaaacttttacatgattctgatgagtatatggacagtgctatattt-------------agtgtacttgaaataatgagtgaa 396  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||             ||||||||||||||||||||||||    
T  28184232 catccgtggtcacttttcaaacttttacatgattctgattagtatatggacagtgttatatttagtgtaattggtcagtgtacttgaaataatgagtgaa 28184133  T
Q  397 ttatgacctatatcatatg 415  Q
    |||||||||||||||||||    
T  28184132 ttatgacctatatcatatg 28184114  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 27994827 - 27994945
Alignment:
Q  15 atgaagcaaatattgaacaaaatagccttagttgttctatattttaaagaattatgcattgatagatgtatct-aggatgcaaatctgttcaagttttag 113  Q
    ||||||||||||| |||||||||| ||  |||| ||||||||||||||||| | |||||  |||||||||||| | ||||||||| | ||||   |||||    
T  27994827 atgaagcaaatatggaacaaaataaccccagttattctatattttaaagaagtgtgcatcaatagatgtatctaacgatgcaaattttttcatcgtttag 27994926  T
Q  114 agtttgtgtcatggactcg 132  Q
    ||||||||||||| |||||    
T  27994927 agtttgtgtcatgaactcg 27994945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 28081360 - 28081478
Alignment:
Q  15 atgaagcaaatattgaacaaaatagccttagttgttctatattttaaagaattatgcattgatagatgtatct-aggatgcaaatctgttcaagttttag 113  Q
    ||||||||||||| |||||||||| ||  |||| ||||||||||||||||| | |||||  |||||||||||| | ||||||||| | ||||   |||||    
T  28081360 atgaagcaaatatggaacaaaataaccccagttattctatattttaaagaagtgtgcatcaatagatgtatctaacgatgcaaattttttcatcgtttag 28081459  T
Q  114 agtttgtgtcatggactcg 132  Q
    ||||||||||||| |||||    
T  28081460 agtttgtgtcatgaactcg 28081478  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 28180139 - 28180087
Alignment:
Q  187 cctggttttgtttgtcattactcattcattatcttaatataatacatcttatt 239  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  28180139 cctggttttgtttatcattactcgttcattatcttaatataatacatcctatt 28180087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 28180235 - 28180172
Alignment:
Q  89 ggatgcaaatctgttcaagttttagagtttgtgtcatggactcgtggtatatgatctggtaata 152  Q
    ||||||||||||| |||   |||||||||||||||||||||||||| ||||||||||| |||||    
T  28180235 ggatgcaaatctgatcataatttagagtttgtgtcatggactcgtgatatatgatctgttaata 28180172  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 27985867 - 27985910
Alignment:
Q  334 ttacatgattctgatgagtatatggacagtgctatatttagtgt 377  Q
    |||||| ||||||||| ||||||||| |||||||||||||||||    
T  27985867 ttacattattctgatgtgtatatggatagtgctatatttagtgt 27985910  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 28072398 - 28072441
Alignment:
Q  334 ttacatgattctgatgagtatatggacagtgctatatttagtgt 377  Q
    |||||| ||||||||| ||||||||| |||||||||||||||||    
T  28072398 ttacattattctgatgtgtatatggatagtgctatatttagtgt 28072441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 27985683 - 27985756
Alignment:
Q  71 cattgatagatgtatct-aggatgcaaatctgttcaagttttagagtttgtgtcatggactcgtggtatatgat 143  Q
    |||| |||||||||||| | ||||||| ||||| || |||| ||||  ||||||||||||||||| ||||||||    
T  27985683 cattaatagatgtatctgacgatgcaattctgtgcatgtttaagagcatgtgtcatggactcgtgttatatgat 27985756  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 27994947 - 27995004
Alignment:
Q  155 tatatactacggtaggtacagacaatagttttcctggttttgtttgtcattactcatt 212  Q
    ||||||||| |||||||| ||||  |||||| |||| ||| |||||||||||||||||    
T  27994947 tatatactatggtaggtatagaccgtagtttccctgttttggtttgtcattactcatt 27995004  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 28072214 - 28072287
Alignment:
Q  71 cattgatagatgtatct-aggatgcaaatctgttcaagttttagagtttgtgtcatggactcgtggtatatgat 143  Q
    |||| |||||||||||| | ||||||| ||||| || |||| ||||  ||||||||||||||||| ||||||||    
T  28072214 cattaatagatgtatctgacgatgcaattctgtgcatgtttaagagcatgtgtcatggactcgtgttatatgat 28072287  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 28081480 - 28081537
Alignment:
Q  155 tatatactacggtaggtacagacaatagttttcctggttttgtttgtcattactcatt 212  Q
    ||||||||| |||||||| ||||  |||||| |||| ||| |||||||||||||||||    
T  28081480 tatatactatggtaggtatagaccgtagtttccctgttttggtttgtcattactcatt 28081537  T

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Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 24747107 - 24747347
Alignment:
Q  29 gaacaaaatagccttagttgttctatattttaaagaattatgcattgatagatgtatcta-ggatgcaaatctgttcaagttttagagtttgtgtcatgg 127  Q
    |||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  24747107 gaacaaaatagcctcagttcttctatattttaaagaattatgcattaatagatgtatctaaggatgcaaatctgttcatgttttagagtttgtgtcatgg 24747206  T
Q  128 actcgtggtatatgatctggtaatatttatatactacggtaggtacagacaatagttttcctggttttgtttgtcattactcattcattatcttaatata 227  Q
    | |||||||||||||||||||||    ||||||  | ||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  24747207 attcgtggtatatgatctggtaaccggtatatatcatggtaggtactgactatagtttccctggttttgtttgttattactcattcattatcttaatata 24747306  T
Q  228 atacatcttattatttatcaaaattattggggatagttaaaacc 271  Q
    |||||||   ||||||||||||| ||||||  ||||||||||||    
T  24747307 atacatc---ttatttatcaaaagtattggtcatagttaaaacc 24747347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 24747381 - 24747452
Alignment:
Q  306 atttcatccgtggtcacttttcaaacttttacatgattctgatgagtatatggacagtgctatatttagtgt 377  Q
    |||||||| |||||||||||||||| |||||||| ||||||||| ||||||  ||| |||||||||||||||    
T  24747381 atttcatctgtggtcacttttcaaaattttacattattctgatgtgtatatcaacattgctatatttagtgt 24747452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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