View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11883_low_7 (Length: 329)
Name: NF11883_low_7
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 45048541 - 45048751
Alignment:
| Q |
24 |
gccattttagagcctactttgaagctagctttgaggccattcttgatgagaggtagctttgattcaccaaatctgaattacnnnnnnnnnnctttgtaat |
123 |
Q |
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| T |
45048541 |
gccattttagagcctactttgaagctagctttgaggccattcttgatgagaggtagctttgattcaccaaatctgaattacttttctttttctttgtaat |
45048640 |
T |
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| Q |
124 |
tgatgctattatttgagttagtatcttatttatttagtttaatgttaaacaacaatacattgtttggtatgatggctacttcaatttttatagtagaaaa |
223 |
Q |
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| T |
45048641 |
tgatgctattatttgagttagtatcttatttatttagtttaatgttaaacaacaatacattgtttggtatgatggctacttcaatttttatattagaaaa |
45048740 |
T |
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| Q |
224 |
agcatgcataa |
234 |
Q |
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| T |
45048741 |
agcatgcataa |
45048751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 45048752 - 45048808
Alignment:
| Q |
260 |
attttcaaattaatgatattttaatgttgccttttgtggtctgattcttctttttct |
316 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45048752 |
attttcaaataaatgatattttaatgttgccttttgtggtctgattcttctttttct |
45048808 |
T |
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