View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11883_low_8 (Length: 328)
Name: NF11883_low_8
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11883_low_8 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 41566523 - 41566850
Alignment:
| Q |
1 |
tgtttataatattctaatcatatttcatcatcataatatttcttcttaaaatttatgcacattatatatacataagattgaatttgtctaattgtgtcat |
100 |
Q |
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| T |
41566523 |
tgtttataatattctaatcatatttcatcatcataatatttcttcttaaagtttatgcacattatatatacatacgattgaatttgtctaattgtgtcat |
41566622 |
T |
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| Q |
101 |
ttatgtatagttataaaattcatcattaatcaaacaccaagaaatatgtatcaataaaaacattaaaggaagataacctgtatgttccagaattgagtat |
200 |
Q |
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| T |
41566623 |
ttatgtatagttataaaattcatcattaatcaaacaccaagaaatatgtatcaataaaaacattaaaggaagataacctgtatgttccagaattgagtat |
41566722 |
T |
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| Q |
201 |
gataagggtggcatgagaacttgatcagtccggaacagcattaacagcttcttgtactttagtaaagttaccacacccctttgagtcaacggtaaaaaca |
300 |
Q |
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| T |
41566723 |
gataagggtggcatgagaacttgatcagtccggaacagcattaacagcttcttgtactttagtaaagttaccacacccctttgagtcaacggtaaaaaca |
41566822 |
T |
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| Q |
301 |
agagttacgttatattttgaaattagtc |
328 |
Q |
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| T |
41566823 |
agagttacgttatattttgaaattagtc |
41566850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 125 - 323
Target Start/End: Complemental strand, 41435037 - 41434852
Alignment:
| Q |
125 |
attaatcaaacaccaagaaatatgtatcaataaaaacattaaaggaagataacctgtatgttccagaattgagtatgataagggtggcatgagaacttga |
224 |
Q |
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| T |
41435037 |
attaatcaaataccaagtaatatgtatcaataaaaacataagag-aagataacctgtatgttccagaattgagtatgataagggtggcatgagaac---a |
41434942 |
T |
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| Q |
225 |
tcagtccggaacagcattaacagcttcttgtactttagtaaagttaccacacccctttgagtcaacggtaaaaacaagagttacgttatattttgaaat |
323 |
Q |
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| T |
41434941 |
tgagtccggaacagcattaacagcttcttgtac--tagtaaagttaccacacccctttga-------gtaagaacaagagttacattatattttgaaat |
41434852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 41435270 - 41435187
Alignment:
| Q |
1 |
tgtttataatattctaatcatatttcatcatcataatatttcttcttaaaatttatgcacattatatatacataagattgaattt |
85 |
Q |
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| T |
41435270 |
tgtttataatattctaatcatatttcatcatcataa-aaaaaatcttaaaatttatgcacaccttatatacatacgattgaattt |
41435187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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