View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11883_low_9 (Length: 320)

Name: NF11883_low_9
Description: NF11883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11883_low_9
NF11883_low_9
[»] chr4 (1 HSPs)
chr4 (9-303)||(36684666-36684960)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 36684666 - 36684960
Alignment:
Q  9 aatgagatgaagggtaacacttttttatacaacccaaatcctttaccacaatttcattgggaagctagatggctttggactgttcgattaagagagaaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36684666 aatgagatgaagggtaacacttttttatacaacccaaatcctttaccacaatttcattgggaagctagatggctttggactgttcgattaagagagaaaa 36684765  T
Q  109 tttttaagattatgagagatcctctataatctaacggggtcttctgcatcgtaaagccaaatgtagagaatttaatttgtgttttatagacttttttaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684766 tttttaagattatgagagatcctctataatctaacggggtcttctgcatcgtaaagccaaatgtagagaatttaatttgtgttttatagacttttttaaa 36684865  T
Q  209 tcttcttttaatatcgatctaaaccatcacggctcattaagttagtccctttgctgctttaaatatagaagagaaaatgatagttctgaaactat 303  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684866 tcttcttttaatatcgatctaaactatcacggctcattaagttagtccctttgctgctttaaatatagaagagaaaatgatagttctgaaactat 36684960  T

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