View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_1 (Length: 1019)
Name: NF11885_high_1
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 524 - 1005
Target Start/End: Complemental strand, 19277149 - 19276666
Alignment:
| Q |
524 |
ctcagtgttatcttgattttctgagagttgttgggatctgtgttgttcttttgtgcagagagagagttaataatagcatataaagagaccaaacattgtc |
623 |
Q |
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| T |
19277149 |
ctcagtgttatcttgattttctgagagttgttgggatctgtgttgttcttttgtgcagagagagagttaataatagcat-taaagagaccaaacattgtc |
19277051 |
T |
|
| Q |
624 |
ttggtttaggagacaaaaagagagagaga--ttaactaaacaacagtgacaaacaaataatagtactagtagttgtttatattaaattaacaaaaccttt |
721 |
Q |
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| T |
19277050 |
ttggtttaggagacaaaaagagagagagagattaactaaacaacagtgacaaacaaataatagtactagtagttgtttacattaaattaacaaaaccttt |
19276951 |
T |
|
| Q |
722 |
tgttgaggtgatttggcttttgattgattctgtgttgatgtgcctgttcttaatccatcatcagttgctgtctcctgttgaaaagcatgattatgatgat |
821 |
Q |
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| T |
19276950 |
tgttgaggtgatttggcttttgattgattctgtgttgatgtgcctgttcttaatccatcatcagttgctgtctcctgttgaaaagcatgattatgatgat |
19276851 |
T |
|
| Q |
822 |
ctgaagaagatgcttttacacttattggagaatctgtttcaaattgtagctctgttgatcctgaatcagtactttctcctcctgattttgaacctcccta |
921 |
Q |
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| T |
19276850 |
ctgaagaagatgcttttacacttattggagaatttgtttcaaattgtagctctgttgatcctgaatcagtactttctcctcctgattttgaacctcccta |
19276751 |
T |
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| Q |
922 |
tgtttgaaattgaaaatacaccaaaga-aaaaccttattttcatgttcaagaccaaaatttcattattttttacattcttttttg |
1005 |
Q |
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| T |
19276750 |
tgtttgaaattgaaaatacaccaaaaacaaaaccttattttcatgttcaagaccaaaatttcattattttttacattcttttttg |
19276666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 218 - 471
Target Start/End: Complemental strand, 19277436 - 19277190
Alignment:
| Q |
218 |
atgattatatgtatttattgaggagccatgcaaatgtactcatcaatatgacatggatagtaaaaagcatctttatctaccatttttcatattttggttt |
317 |
Q |
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| T |
19277436 |
atgattatatgtatttattgaggagccatgcaaatgtactcatcaatatgacatggatagtaaaaagcatatttatctaccattttccatattttggttt |
19277337 |
T |
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| Q |
318 |
atattgaagattatctttctaactcaagaatcaagatttaattaacttaacaaaagtgaagtaggtgtgtgttagtaaattttaataaaaaaggtcacat |
417 |
Q |
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| T |
19277336 |
atattgaagattagctttctaactc-------aagatttaattaacttaacacaagtgaagtaggtgtgtgttagtaaattttaataaaaaaggtcacat |
19277244 |
T |
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| Q |
418 |
cgataatgccttagaagattctctccctttgttttcttttttcatgttcatata |
471 |
Q |
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| T |
19277243 |
tgataatgacttagaagattctctccctttgttttcttttttcatgttaatata |
19277190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19277680 - 19277448
Alignment:
| Q |
1 |
atggattattattattatgtcatataaggcaacatagcaatataacaggttaactatnnnnnnnngaatgtagtcatagcaataacttaggtttctaaca |
100 |
Q |
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| T |
19277680 |
atggattattattattatttcatataaggcaacatagcaata--acaggtttactataaaaaaaaaaatgtagtcatagcaataacttagctttctaaca |
19277583 |
T |
|
| Q |
101 |
actaaataaattatatggggagatgaataaatttgttaactattactactcaaattcaaactcaaagatattagattcacttcatcaagttttaaccaat |
200 |
Q |
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| T |
19277582 |
actaaataaattatatggggagatgaataaatttgttaactattactactcaaattcaaactcaaa-atattagattcacttcatcaagtttcaaccaat |
19277484 |
T |
|
| Q |
201 |
aaataatgctagataatatgattatatgtatttatt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
19277483 |
aaataatgctagataatatgattatatgtatttatt |
19277448 |
T |
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