View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_17 (Length: 441)
Name: NF11885_high_17
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 36333166 - 36332741
Alignment:
| Q |
1 |
tcaaaacagtaaataaagaaagaccaaactttcccttagtttatgggatatggaaacagataactaagtgatttaacactttaacagtatcagtgattan |
100 |
Q |
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| T |
36333166 |
tcaaaacagtaaataaagaaagaccaaactttcccttagtttatgggatatggaaacagataactaagtgatttaacactttaacagtatcagtgattat |
36333067 |
T |
|
| Q |
101 |
nnnnnn--actattaaccttttctttggctgctgctgatatttgattctgtgatgaagaggctgttcttatagcagcagaagcatcattggatattatca |
198 |
Q |
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| T |
36333066 |
ttttttttactattaaccttttctttggctgctgctgatatttgattctgtgatgaagaggctgttcttatagcagcagaagcatcattggatattatca |
36332967 |
T |
|
| Q |
199 |
tcttctgttgttgtagctgaagattctgctgatccatattattattattatgatctgatgaaaaagaagatgcttttttactacttaagggtgattctgg |
298 |
Q |
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| T |
36332966 |
tcttctgttgttgtagctgaagattctgctgatccatattattattat---gatctgatgaaaaagaagatgcttttttactacttaagggtgattctgg |
36332870 |
T |
|
| Q |
299 |
ctcaaaagggttctcatttttgcttgatagtgctgaatcactgctttcacctcctgatttgttaccacctccctgtatttccaaatacaaatcattagta |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36332869 |
ctcaaaagggttctcatttttgcttgatagtgctgaatcactgctttcacctcctgatttgttaccacctccctgtatttccaaatacaaatcattagta |
36332770 |
T |
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| Q |
399 |
tattcaaatatataatttaatcggttcat |
427 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
36332769 |
tattcaaatatataatttaatcggctcat |
36332741 |
T |
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