View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_18 (Length: 431)
Name: NF11885_high_18
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_18 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 174 - 431
Target Start/End: Original strand, 25480364 - 25480621
Alignment:
| Q |
174 |
ttcaactaggttttagttttacaatgcttgagaaggttaaaaggaaacatgacaaaaaggaaaatatgtctggtgagtctcggattgtatttgaccctat |
273 |
Q |
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| T |
25480364 |
ttcaactaggtttaagttttacaatgcttgagaaggttaaaaggaaacatgacaaaaaggaaaatatgtctggtgagtctcagattgtatttgaccctat |
25480463 |
T |
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| Q |
274 |
ggaaagaagaggtagtatggttggtggctcacttttgcatcgacaattcagcaagtagaaaccttaccttgagaagaagatgcaacattgatgtgatgaa |
373 |
Q |
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| T |
25480464 |
ggaaagaagaggtagtatggttggtggctcacttttgcattgacaattcaccaagtagaaaccttaccttgagaagaagatgcaacattgatgtgatgaa |
25480563 |
T |
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| Q |
374 |
aactaacaagattaatggagatagcattaacaatgggagataaatgaatcaaaagtcc |
431 |
Q |
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| T |
25480564 |
aactaacaagattaatggagatagcattaacaatgggagataaaagaatcaaaagtcc |
25480621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 174 - 431
Target Start/End: Complemental strand, 25863741 - 25863484
Alignment:
| Q |
174 |
ttcaactaggttttagttttacaatgcttgagaaggttaaaaggaaacatgacaaaaaggaaaatatgtctggtgagtctcggattgtatttgaccctat |
273 |
Q |
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| T |
25863741 |
ttcaactaggtttaagttttacaatgcttgagaaggttaaaaggaaacatgacaaaaaggaaaatatgtctggtgagtctcagattgtatttgaccctat |
25863642 |
T |
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| Q |
274 |
ggaaagaagaggtagtatggttggtggctcacttttgcatcgacaattcagcaagtagaaaccttaccttgagaagaagatgcaacattgatgtgatgaa |
373 |
Q |
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| T |
25863641 |
ggaaagaagaggtagtatggttggtggctcacttttgcattgacaattcaccaagtagaaaccttaccttgagaagaagatgcaacattgatgtgatgaa |
25863542 |
T |
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| Q |
374 |
aactaacaagattaatggagatagcattaacaatgggagataaatgaatcaaaagtcc |
431 |
Q |
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| T |
25863541 |
aactaacaagattaatggagatagcattaacaatgggagataaaagaatcaaaagtcc |
25863484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 25606342 - 25606231
Alignment:
| Q |
164 |
ttaccagccattcaactaggttttagttttacaatgcttgagaaggttaaaaggaaacatgacaaaaaggaaaatatgtctggtgagtctcggattgtat |
263 |
Q |
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| T |
25606342 |
ttaccagccatacaactaggtttaagttttacaatgcttgagaaggttaaaaggaaacatgacaaaaaggaaaatatgcatagtgagtctcggattgtat |
25606243 |
T |
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| Q |
264 |
ttgaccctatgg |
275 |
Q |
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| T |
25606242 |
ttcatcctatgg |
25606231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 25606528 - 25606452
Alignment:
| Q |
35 |
cagagcagcaaacagcacaacaggcggttttcatactgacaaaaatgaattggtacaaatatcgacttccttagagt |
111 |
Q |
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| T |
25606528 |
cagagcagcaaacagcccaacaggcggtgttcatactgacaaaaatgaattggtacaaatatcgacttccttagagt |
25606452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 25608561 - 25608459
Alignment:
| Q |
329 |
tagaaaccttaccttgagaagaagatgcaacattgatgtgatgaaaactaacaagattaatggagatagcattaacaatgggagataaatgaatcaaaag |
428 |
Q |
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| T |
25608561 |
tagaaaccttacctctagaagaagatgcaacatcgatgtgatgagaactaacaagattaatggaaatagcattaacagtaggagatgaaagaatcaaaag |
25608462 |
T |
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| Q |
429 |
tcc |
431 |
Q |
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| T |
25608461 |
tcc |
25608459 |
T |
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