View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_high_19 (Length: 420)

Name: NF11885_high_19
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_high_19
NF11885_high_19
[»] chr7 (5 HSPs)
chr7 (205-388)||(25674892-25675075)
chr7 (206-275)||(25675746-25675815)
chr7 (206-307)||(44390691-44390791)
chr7 (206-287)||(48627763-48627844)
chr7 (206-270)||(26582629-26582693)
[»] chr2 (11 HSPs)
chr2 (206-388)||(4855226-4855408)
chr2 (206-310)||(42330918-42331022)
chr2 (206-270)||(4854473-4854537)
chr2 (205-275)||(38823853-38823923)
chr2 (206-307)||(38823220-38823321)
chr2 (206-295)||(40321142-40321231)
chr2 (212-306)||(16870585-16870679)
chr2 (205-275)||(39062899-39062969)
chr2 (212-277)||(35029859-35029924)
chr2 (206-263)||(40320241-40320298)
chr2 (206-306)||(34229043-34229143)
[»] chr1 (3 HSPs)
chr1 (205-327)||(41459386-41459508)
chr1 (206-306)||(7338767-7338867)
chr1 (206-316)||(46178120-46178230)
[»] chr6 (1 HSPs)
chr6 (137-199)||(32211057-32211119)
[»] chr8 (7 HSPs)
chr8 (206-310)||(40030495-40030599)
chr8 (206-277)||(11519350-11519421)
chr8 (206-309)||(42578709-42578812)
chr8 (206-307)||(20168982-20169082)
chr8 (206-316)||(13017742-13017852)
chr8 (206-243)||(6462647-6462684)
chr8 (205-277)||(13017084-13017156)
[»] chr4 (7 HSPs)
chr4 (206-274)||(31414076-31414144)
chr4 (206-295)||(17869644-17869733)
chr4 (205-262)||(27339715-27339772)
chr4 (206-291)||(41327702-41327787)
chr4 (206-305)||(17273625-17273724)
chr4 (238-270)||(27860987-27861019)
chr4 (206-250)||(44096013-44096057)
[»] scaffold0098 (1 HSPs)
scaffold0098 (206-290)||(52264-52348)
[»] chr5 (3 HSPs)
chr5 (212-306)||(33530668-33530762)
chr5 (206-307)||(2398221-2398321)
chr5 (205-296)||(31607255-31607346)
[»] chr3 (4 HSPs)
chr3 (206-296)||(40613055-40613145)
chr3 (206-271)||(44637768-44637833)
chr3 (206-306)||(3799832-3799931)
chr3 (206-275)||(44636976-44637047)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 205 - 388
Target Start/End: Original strand, 25674892 - 25675075
Alignment:
Q  205 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 304  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25674892 cgagttcatctttgctccatttgtgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaa 25674991  T
Q  305 agattagaaataagtattgttacaaaagatgtaacgcatcnnnnnnncctctcctgatacaatgcttaactttcatcttcctct 388  Q
    ||||||||||||||||||||||||||| ||||||||||||       |||||| ||||||| ||||||||||||||||||||||    
T  25674992 agattagaaataagtattgttacaaaaaatgtaacgcatctttttttcctctcttgatacagtgcttaactttcatcttcctct 25675075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 25675815 - 25675746
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 275  Q
    |||||||||||||||||||||||||| | || |||||||| ||||||||| |||||||||||||| ||||    
T  25675815 gagttcatctttgctccatttatgttggctccatttactccttttcaatgtatagatgtgtgacatgtgg 25675746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 44390791 - 44390691
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||| ||||||||||||||||||| ||| || |||||||| |||| ||| || |||| ||||||| |||| | ||| ||||| ||||||||  |||||||    
T  44390791 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtggca-aaaaaaatctaaaggctacaattaaaa 44390693  T
Q  306 ga 307  Q
    ||    
T  44390692 ga 44390691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 48627763 - 48627844
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatc 287  Q
    ||||||||||||||||||||||   ||| || |||||||| |||| |||||||  |||| ||||| |||||| |||||||||    
T  48627763 gagttcatctttgctccatttaccattgctccatttactccttttgaatgcatgaatgtttgacatgtggaaaaaacaaatc 48627844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 26582693 - 26582629
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 270  Q
    |||||||||||| |||||||||| |||| || |||||||| |||| |||  | ||||||||||||    
T  26582693 gagttcatctttactccatttatatttgctccatttactccttttaaatttacagatgtgtgaca 26582629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 206 - 388
Target Start/End: Complemental strand, 4855408 - 4855226
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4855408 gagttcatctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaaa 4855309  T
Q  306 gattagaaataagtattgttacaaaagatgtaacgcatcnnnnnnncctctcctgatacaatgcttaactttcatcttcctct 388  Q
    |||||||||||||||| ||||||||| ||||||||||||       |||||| ||||||| |  |||||||||||||||||||    
T  4855308 gattagaaataagtatcgttacaaaaaatgtaacgcatctttttttcctctcttgatacagtcgttaactttcatcttcctct 4855226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 42331022 - 42330918
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    ||||||||||||||||||||||   ||| |||||||| |  ||||||||||||||||||||||||| ||  | ||| ||||||||||| |  ||||||||    
T  42331022 gagttcatctttgctccatttactcttgctcaatttatttcttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggttgagattaaaa 42330923  T
Q  306 gatta 310  Q
    |||||    
T  42330922 gatta 42330918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 4854473 - 4854537
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 270  Q
    ||||||||||||||||||||||||||   || |||||||| ||||||||| ||||||||||||||    
T  4854473 gagttcatctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgaca 4854537  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 38823923 - 38823853
Alignment:
Q  205 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 275  Q
    ||||||||||||| || |||||| || |  ||||||||||||||||||||| |||||||||||||| ||||    
T  38823923 cgagttcatctttccttcatttaagtctcctcaatttactctttttcaatgtatagatgtgtgacatgtgg 38823853  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 38823220 - 38823321
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    ||||||||||||||||||||||| |||| || |||||||| |||| |||  | |||||||||||| |||||| ||| ||||  |||| | | ||||||||    
T  38823220 gagttcatctttgctccatttatatttgctccatttactccttttgaatttacagatgtgtgacatgtggaaaaaataaatgtaaagacaaagattaaaa 38823319  T
Q  306 ga 307  Q
    ||    
T  38823320 ga 38823321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 40321231 - 40321142
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggct 295  Q
    ||||||||||||||||||||||   ||| || |||||||| |||||||||||||||||  |||||| ||| | ||| |||||||| ||||    
T  40321231 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggct 40321142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 16870585 - 16870679
Alignment:
Q  212 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaag 306  Q
    ||||||||||||||||   ||  |||||||| || ||||||||||||||||||||||||| | | | ||| ||||||||||| |  |||||||||    
T  16870585 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaag 16870679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 39062969 - 39062899
Alignment:
Q  205 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 275  Q
    ||||| |||||||| |||||||||||||||||||||||| |  ||||||  ||||||||| ||||| ||||    
T  39062969 cgagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtgg 39062899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 35029924 - 35029859
Alignment:
Q  212 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 277  Q
    |||||||||||||||| ||||  ||||||||| |  ||||||  ||||||||||||||| ||||||    
T  35029924 atctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtggaa 35029859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 40320241 - 40320298
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatg 263  Q
    ||||||||||||||||||||||   ||| || ||||| || |||||||||||||||||    
T  40320241 gagttcatctttgctccatttagccttgctccatttaatccttttcaatgcatagatg 40320298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 34229143 - 34229043
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||| ||||||||||||||||| | ||  ||||||||| |  ||| ||  ||||||||||||||| |||||| ||| ||| |||| ||||  ||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T
Q  306 g 306  Q
    |    
T  34229043 g 34229043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 41459508 - 41459386
Alignment:
Q  205 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41459508 cgagttcatctttgctccatttatgtttgttcaatttactcattttcaatacatagatgtgtgacacgtggaacaaacaaatccaaagactatgattaaa 41459409  T
Q  305 agattagaaataagtattgttac 327  Q
    |||||||||||||||||||||||    
T  41459408 agattagaaataagtattgttac 41459386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 7338867 - 7338767
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||| ||||||||||||||||||||||  |||||||||||  ||||||  ||||||||||| ||| |||||| ||| |||  ||| || | |||||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtggaaaaaataaaatcaatggttgtgattaaaa 7338768  T
Q  306 g 306  Q
    |    
T  7338767 g 7338767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 46178230 - 46178120
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||| |||||||||||||||||||   | || |||||| | | |||| ||||||||| | |||||||||| | |||||||  ||||||||  ||||||||    
T  46178230 gagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacacgtggcaaaaacaaaatcaaaggctcagattaaaa 46178131  T
Q  306 gattagaaata 316  Q
    ||||| |||||    
T  46178130 gattaaaaata 46178120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 32211057 - 32211119
Alignment:
Q  137 ataatgtacataatttgttttaatctttattgtttccacatgatttgttgtaagcaatgacct 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32211057 ataatgtacataatttgttctaatctttattgtttccacatgatttgttgtaagcaatgacct 32211119  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 40030599 - 40030495
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    ||||||||||||||||||||||   ||| |||||||| || ||||||||||||||||||||||||| ||  | ||| |||||||||||||  ||||||||    
T  40030599 gagttcatctttgctccatttactcttgctcaatttattccttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggctgagattaaaa 40030500  T
Q  306 gatta 310  Q
    |||||    
T  40030499 gatta 40030495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 11519350 - 11519421
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 277  Q
    |||||||||||||||| ||||| |||| |||||||||| |  ||||||  ||||||||||||||| ||||||    
T  11519350 gagttcatctttgctcaatttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtggaa 11519421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 42578709 - 42578812
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||| ||||||||||||||||||||||| ||||||||| |  ||||||  ||||||||| ||||| |||| | ||| |||  ||| ||||  ||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  306 gatt 309  Q
    ||||    
T  42578809 gatt 42578812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 20169082 - 20168982
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||| ||||||||||||||||||| ||| || |||||||| |||| ||| || |||| ||||||| |||| | ||| ||||| ||||||||  |||||||    
T  20169082 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtggca-aaaaaaatctaaaggctacaattaaaa 20168984  T
Q  306 ga 307  Q
    ||    
T  20168983 ga 20168982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 13017852 - 13017742
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||| |||||||||||||||||||   | || |||||| | | |||| ||||||||| | ||||| |||| | |||||||  ||||||||  ||||||||    
T  13017852 gagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacatgtggcaaaaacaaaatcaaaggctcagattaaaa 13017753  T
Q  306 gattagaaata 316  Q
    ||||| |||||    
T  13017752 gattaaaaata 13017742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 6462684 - 6462647
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttac 243  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttac 6462647  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 13017084 - 13017156
Alignment:
Q  205 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 277  Q
    ||||| |||||||||||||||||||   | || |||||| | | |||| ||||||||||| ||||||||||||    
T  13017084 cgagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatgtatgacacgtggaa 13017156  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 31414076 - 31414144
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtg 274  Q
    |||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||    
T  31414076 gagttcatctttgctccatttatgtttgctccatttgctcattttcaatgcatagatgtgtgacacgtg 31414144  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 17869644 - 17869733
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggct 295  Q
    ||||||||||||||||||||||   ||| || |||||||| |||||||||||||||||  |||||| ||| | ||| |||||||| ||||    
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggct 17869733  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 27339715 - 27339772
Alignment:
Q  205 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagat 262  Q
    |||||||||||||||||||||||   || ||| |||||||| ||| ||||||||||||    
T  27339715 cgagttcatctttgctccatttagtattcttccatttactcatttccaatgcatagat 27339772  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 41327702 - 41327787
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaa 291  Q
    ||||||| |||| |||||||||  |||| |||||||| || ||||||||  ||||||||||||||  ||| | ||| |||||||||    
T  41327702 gagttcaactttactccatttagctttgctcaatttattccttttcaataaatagatgtgtgacatatggtaaaaataaatccaaa 41327787  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 17273724 - 17273625
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaattta-ctctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 304  Q
    ||||| |||||||||||||||| || || |||||||| |||  || ||| |||||||||| |||||||||| | |||||||| ||| ||||  |||||||    
T  17273724 gagtttatctttgctccatttaagtgtgctcaatttatctc-attccaaagcatagatgtatgacacgtggcaaaaacaaattcaagggctgagattaaa 17273626  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 27860987 - 27861019
Alignment:
Q  238 atttactctttttcaatgcatagatgtgtgaca 270  Q
    |||||||| ||||||||||||||||||||||||    
T  27860987 atttactccttttcaatgcatagatgtgtgaca 27861019  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 44096057 - 44096013
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactcttttt 250  Q
    |||| ||||||| ||| ||||||| ||||||||||||||||||||    
T  44096057 gagtccatctttactctatttatgattgttcaatttactcttttt 44096013  T

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Target: scaffold0098 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 52264 - 52348
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaa 290  Q
    ||||||||||||||||||||| |||||  || |||||||| |||||||||||||||||||||||| |||  | ||||||||||||    
T  52264 gagttcatctttgctccatttttgtttcctccatttactccttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 52348  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 33530762 - 33530668
Alignment:
Q  212 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaag 306  Q
    ||||||||||||||||   ||  |||||||| || ||||||||||||||||||||||||| | | | ||| ||||||||||| |  |||||||||    
T  33530762 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaag 33530668  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 2398321 - 2398221
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    ||||||||||||||||||||| |||||| |  ||||||||||||| | |  | |||||||||||| |||| | || |||||| |||||||  ||||||||    
T  2398321 gagttcatctttgctccatttttgtttgcttcatttactcttttt-agtttacagatgtgtgacatgtggtaaaatcaaatctaaaggctgagattaaaa 2398223  T
Q  306 ga 307  Q
    ||    
T  2398222 ga 2398221  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 31607255 - 31607346
Alignment:
Q  205 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 296  Q
    |||||||||||||||||||||||   ||  || |||||||| |||||||||||| |||   |||||| ||||| ||| |||||||| |||||    
T  31607255 cgagttcatctttgctccatttaacgttcctccatttactccttttcaatgcatggataaatgacacatggaaaaaataaatccaagggcta 31607346  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 40613055 - 40613145
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 296  Q
    ||||||||||||||||||||||   ||  || ||||| || |||| ||||||||||||| ||||| |||||| ||||||||| || |||||    
T  40613055 gagttcatctttgctccatttaaccttactccatttaatccttttgaatgcatagatgtttgacatgtggaaaaaacaaatctaatggcta 40613145  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 44637833 - 44637768
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacac 271  Q
    ||||||||||||||||||| || || || || |||||||| |||||||  ||||||||||||||||    
T  44637833 gagttcatctttgctccatctaagtatgctccatttactccttttcaagacatagatgtgtgacac 44637768  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 3799832 - 3799931
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 305  Q
    |||| ||||||||||||||||| | ||| ||||||||  |  ||| |||||||||||||||||||| ||| | ||| ||||| ||||| |  ||||||||    
T  3799832 gagtccatctttgctccattta-gcttgctcaatttatcccattttaatgcatagatgtgtgacacatggtaaaaataaatctaaaggttgagattaaaa 3799930  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 44636976 - 44637047
Alignment:
Q  206 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatag--atgtgtgacacgtgg 275  Q
    |||||||||||||||||||||   |||  || |||||||| |||| |||||||||  |||||||||||||||    
T  44636976 gagttcatctttgctccattttactttactctatttactcctttttaatgcatagatatgtgtgacacgtgg 44637047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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