View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_20 (Length: 388)
Name: NF11885_high_20
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 150 - 372
Target Start/End: Original strand, 32998502 - 32998724
Alignment:
| Q |
150 |
cgatcatgattgaacggccacattgtcccagttgtgtgaatgcggataatccctaatcgtaggggagtcggatccacgatatacatcaattaaataattt |
249 |
Q |
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| T |
32998502 |
cgatcatgattgaacgcccacattgtcccaattgtgtgaatgcggagaattcctgattgcaggggagccggatccacgatatacatcaattaaataattt |
32998601 |
T |
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| Q |
250 |
tcaagctgagtgtttacctccatggttgatccatccttagctaactgttgtgatggagcaaattcaacaatatgatcagtcacagaaagaagccattcaa |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32998602 |
tcaagctgagtgtttacctccatggttgatccatccttagctaactgttgtgatggagcaaattcaacaatatgatcagtcacagaaagaagccattcaa |
32998701 |
T |
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| Q |
350 |
tttcttttctccacctagtcttc |
372 |
Q |
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| T |
32998702 |
tttcttttctccacctagtcttc |
32998724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 32998316 - 32998422
Alignment:
| Q |
58 |
ttaagatacatcataattgttctctag--------tgatgatattcggattccatacagttagggattctccgtattcatgcagttgggacatcagtagt |
149 |
Q |
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| T |
32998316 |
ttaagatacatcataattgttctctaggagactcttgatgatattcggatttcacgcagttagggattctccgcattcatgcagttgggacatcagtagt |
32998415 |
T |
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| Q |
150 |
cgatcat |
156 |
Q |
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| T |
32998416 |
cgttcat |
32998422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 3548715 - 3548615
Alignment:
| Q |
262 |
tttacctccatggttgatccatccttagctaactgttgtgatggagcaaattcaacaatatgatcagtcacagaaagaagccattcaatttcttttctcc |
361 |
Q |
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| T |
3548715 |
tttacctccatgattgaaccatccttggatttctgctgtgttggaaccatttcaacaacgtaatcggtgaccgaaagaagccaatcaatttcttttctcc |
3548616 |
T |
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| Q |
362 |
a |
362 |
Q |
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| T |
3548615 |
a |
3548615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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