View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11885_high_22 (Length: 371)
Name: NF11885_high_22
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 35973652 - 35973997
Alignment:
| Q |
17 |
aaaatttcttatatatacatcttcaaaa-ctgtaaattatcttgttcagtaatttatcttttgaaagtgcatttttaaaactacataaggtttggttttg |
115 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35973652 |
aaaatttcatatatatacatcttaaaaaactgtaaattatcttgttcagtaatttatcttttgaaagtgcatttttaaaactacataaggtttggttttg |
35973751 |
T |
|
| Q |
116 |
gagtgagctttt-aaactgaccaaactctaaataactgcaggtaccatatagactatatgattatacaagtctaataccatccgtaattaaggcacttct |
214 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35973752 |
gagtgagctttttaaactgaccaaactctaaataactgcaggtaccatatagactatatgattatacaagtctaataccatccgtaattaaggcacttct |
35973851 |
T |
|
| Q |
215 |
catgtgtaacctcttggtcacataaatcatagtaatttgagtgttagagtgcataaggatacacgaccactatcggacaccatcgcgtcatgaatttcag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
35973852 |
catgtgtaacctcttggtcacataaatcatagtaatttgagtgttagagtgcataaggatacacggccactatcggacaccatcgcgccatgaatttcag |
35973951 |
T |
|
| Q |
315 |
gcataccaaccggttatggtcttaaggaattgttcttccacatctc |
360 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35973952 |
gcataccaaccagttatggtcttaaggaattgttcttccacatctc |
35973997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University