View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_27 (Length: 340)
Name: NF11885_high_27
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 48806625 - 48806296
Alignment:
| Q |
1 |
ctctcaaagccttcaaagcttcaatcaaaccctcatccatcacaccatggtcatgtgtagcatcatggaacttcaccattgatccatgctcacaccctcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48806625 |
ctctcaaagccttcaaagcttcaatcaaaccctcatccatcacaccatggtcatgtgtagcatcatggaacttcaccattgatccatgctcacaccctcg |
48806526 |
T |
|
| Q |
101 |
tcgcacttacttcttatgtggattcacctgcaccacagattccacacacatcaaccaaatcacactagaccctgcaagctactcaggctcactcacgcca |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48806525 |
tcgcacttacttcttatgtggtttcacctgcaccacagattccacacacatcaaccaaatcacactagaccctgcaagctactcaggctcactcacgcca |
48806426 |
T |
|
| Q |
201 |
ctcatctctaaactcacccaactcatcacactagacctctctgataacaacttctttggctcaattccttcttcaatctcttccctttccaacctcaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48806425 |
ctcatctctaaactcacccaactcatcacactagacctctctgataacaacttctttggctcaattccttcttcaatctcttccctttccaacctcaaaa |
48806326 |
T |
|
| Q |
301 |
ccttaactctccgatccaattccttctctg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
48806325 |
ccttaactctccgatccaattccttctctg |
48806296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 13567584 - 13567652
Alignment:
| Q |
251 |
cttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaa |
319 |
Q |
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| T |
13567584 |
cttctctggctctattccttcttcaatatcttccctttccaacctcaaaatcttaaccctctgatccaa |
13567652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 31860152 - 31860080
Alignment:
| Q |
251 |
cttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaattcc |
323 |
Q |
| |
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| T |
31860152 |
cttctctgactctattccttcttcaatatctagcctttccaacctcaaaatcttaaccctctgatccaattcc |
31860080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 44339175 - 44339218
Alignment:
| Q |
264 |
attccttcttcaatctcttccctttccaacctcaaaaccttaac |
307 |
Q |
| |
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| T |
44339175 |
attccttcttcaatatcttccctttccaacctcaaaatcttaac |
44339218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 34056906 - 34057160
Alignment:
| Q |
3 |
ctcaaagccttcaaagcttcaatcaaaccctcatccatcacaccatggtcatgtgtagcatcatggaacttcaccattgatccatgctcacaccctcgtc |
102 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||| ||| ||||| || ||||| ||| |||||||||||||||||||||||| || ||| |||| || |
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| T |
34056906 |
ctcaaagcattcaaagcctcaaccaaaccctcttccgcgacaccttgatcatgcatagaatcatggaacttcaccattgatccttgttcagttcctcatc |
34057005 |
T |
|
| Q |
103 |
gcacttacttcttatgtggattcacctgcaccacagattccacacacatcaaccaaatcacactagaccctgcaagctactcaggctcactcacgccact |
202 |
Q |
| |
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||||| ||||| | ||||| ||||||| |||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| |||| |
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| T |
34057006 |
gcactcacttcatctgtgggttcacctacacctttgattccacacacatcaatcaaatcaccctcaaccctgcaagctactcaggctcactcacctcact |
34057105 |
T |
|
| Q |
203 |
catctctaaactcacccaactcatcacactagacctctctgataacaacttcttt |
257 |
Q |
| |
|
||||||| |||||||| |||| |||||||| |||| || | |||||||||||| |
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|
| T |
34057106 |
catctctcaactcaccaaacttgtcacactatacctatccggcaacaacttcttt |
34057160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 5061940 - 5061885
Alignment:
| Q |
252 |
ttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaac |
307 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
5061940 |
ttctctggctctattccttcttcaatatcttccctttccaacctcaaaatcttaac |
5061885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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