View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_31 (Length: 309)
Name: NF11885_high_31
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 14516378 - 14516542
Alignment:
| Q |
112 |
tcaatggttaataaaacaaaagagtaatagttagcattgaatgaaacccaaataaatcaactctgttactattacattccaatgaaaggaagaaggnnnn |
211 |
Q |
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| T |
14516378 |
tcaatggttaataaaacaaaagagtaatagttagcattgaatgaaacccaaataaatcaactctgttacaattccaatgaaaggaaa--aaaaaaaaaaa |
14516475 |
T |
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| Q |
212 |
nnnnctaaaatttacaccatcaccaccttcacaaagttaaaaagcatttggagaagggaagctacaa |
278 |
Q |
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| T |
14516476 |
aaaactaaaatttacaccataaccaccttcacaaagttaaaaagcatttggagaagggaagctacaa |
14516542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14516279 - 14516322
Alignment:
| Q |
1 |
catttgatactgctcacttctctgatttcttttcggttccatac |
44 |
Q |
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| T |
14516279 |
catttgttactgctcacttctctgatttcttttcggttccatac |
14516322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 14516347 - 14516381
Alignment:
| Q |
27 |
ttcttttcggttccatacattataattttagtcaa |
61 |
Q |
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| T |
14516347 |
ttcttttcggttccatacattataattttagtcaa |
14516381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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