View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_high_34 (Length: 284)

Name: NF11885_high_34
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_high_34
NF11885_high_34
[»] chr1 (17 HSPs)
chr1 (10-90)||(13120774-13120854)
chr1 (10-85)||(17674267-17674342)
chr1 (10-90)||(44836633-44836713)
chr1 (11-90)||(22386744-22386823)
chr1 (155-242)||(24557023-24557110)
chr1 (10-80)||(42740186-42740256)
chr1 (155-242)||(17674110-17674197)
chr1 (10-85)||(24556882-24556957)
chr1 (10-85)||(26486286-26486361)
chr1 (155-249)||(37873505-37873599)
chr1 (155-249)||(42740326-42740420)
chr1 (11-90)||(37873665-37873749)
chr1 (10-90)||(27703437-27703517)
chr1 (159-237)||(22386597-22386675)
chr1 (155-248)||(26486125-26486218)
chr1 (10-85)||(84-160)
chr1 (10-85)||(48722281-48722357)
[»] chr5 (12 HSPs)
chr5 (10-85)||(17325921-17325996)
chr5 (10-90)||(10033623-10033702)
chr5 (20-85)||(18873546-18873611)
chr5 (164-241)||(17326075-17326152)
chr5 (155-243)||(16515726-16515814)
chr5 (10-90)||(7390309-7390388)
chr5 (9-61)||(138219-138270)
chr5 (155-243)||(7390156-7390244)
chr5 (155-245)||(8379197-8379286)
chr5 (201-242)||(931636-931677)
chr5 (156-248)||(3349479-3349571)
chr5 (25-85)||(16515596-16515656)
[»] chr6 (7 HSPs)
chr6 (10-90)||(6294330-6294410)
chr6 (12-90)||(3748476-3748554)
chr6 (10-82)||(30915277-30915349)
chr6 (10-90)||(21946183-21946261)
chr6 (155-236)||(3748329-3748411)
chr6 (10-85)||(29149480-29149556)
chr6 (201-237)||(22504011-22504047)
[»] chr2 (13 HSPs)
chr2 (155-254)||(13997534-13997633)
chr2 (10-90)||(29480545-29480625)
chr2 (12-84)||(38599479-38599551)
chr2 (12-84)||(38599593-38599665)
chr2 (155-243)||(39081617-39081704)
chr2 (13-62)||(39081476-39081525)
chr2 (10-90)||(1418985-1419065)
chr2 (10-90)||(13997390-13997469)
chr2 (11-82)||(36059821-36059892)
chr2 (197-232)||(1419172-1419207)
chr2 (165-248)||(29480386-29480469)
chr2 (10-85)||(26151658-26151734)
chr2 (155-243)||(36059660-36059748)
[»] chr7 (14 HSPs)
chr7 (12-85)||(36438264-36438337)
chr7 (10-90)||(7366763-7366843)
chr7 (10-90)||(40737908-40737988)
chr7 (10-90)||(26633439-26633519)
chr7 (155-237)||(7370013-7370094)
chr7 (10-61)||(18895334-18895385)
chr7 (10-85)||(32956851-32956927)
chr7 (180-236)||(40737760-40737816)
chr7 (10-85)||(40841157-40841233)
chr7 (155-233)||(36438117-36438194)
chr7 (201-237)||(4100228-4100264)
chr7 (10-85)||(12251199-12251275)
chr7 (10-85)||(33419028-33419104)
chr7 (156-243)||(40001466-40001553)
[»] chr8 (11 HSPs)
chr8 (10-90)||(3628655-3628735)
chr8 (10-84)||(36515069-36515143)
chr8 (9-85)||(42076185-42076260)
chr8 (180-249)||(35875147-35875216)
chr8 (10-85)||(29372433-29372508)
chr8 (155-234)||(42076330-42076408)
chr8 (11-90)||(32098085-32098165)
chr8 (200-243)||(33453021-33453064)
chr8 (188-234)||(18112378-18112424)
chr8 (174-248)||(36514905-36514978)
chr8 (10-85)||(44664957-44665033)
[»] chr3 (15 HSPs)
chr3 (12-90)||(42009170-42009248)
chr3 (11-90)||(46904819-46904898)
chr3 (10-84)||(50677228-50677302)
chr3 (12-90)||(7767144-7767222)
chr3 (155-243)||(46904963-46905051)
chr3 (10-82)||(51147014-51147085)
chr3 (10-64)||(36538120-36538174)
chr3 (183-248)||(27303436-27303501)
chr3 (155-243)||(7767287-7767375)
chr3 (10-90)||(27303263-27303341)
chr3 (155-242)||(42009039-42009126)
chr3 (201-248)||(51147205-51147252)
chr3 (10-85)||(52655034-52655110)
chr3 (10-55)||(15987276-15987321)
chr3 (200-248)||(48626779-48626827)
[»] chr4 (10 HSPs)
chr4 (10-90)||(35653888-35653968)
chr4 (10-84)||(10575437-10575511)
chr4 (12-85)||(22423764-22423837)
chr4 (180-249)||(24449347-24449416)
chr4 (155-243)||(35653735-35653823)
chr4 (10-85)||(5545405-5545481)
chr4 (10-90)||(21791456-21791535)
chr4 (199-237)||(22423938-22423976)
chr4 (160-248)||(23256825-23256911)
chr4 (10-85)||(41038327-41038403)
[»] scaffold0564 (1 HSPs)
scaffold0564 (10-85)||(1138-1214)
[»] scaffold0035 (1 HSPs)
scaffold0035 (10-85)||(22716-22792)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 13120854 - 13120774
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  13120854 cgcataaaccattcattttcccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctc 13120774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 17674342 - 17674267
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||    
T  17674342 cgcataaaccatttgttttcccctttcctacgacgtaagagtgacattccaaatgacaccgttaggtaaatttcac 17674267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 44836713 - 44836633
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |  |||| |||||||||||||| ||||    
T  44836713 cgcataaaccattcgtttttccctttcccacgacgtaggagtgacattccaaatgacaccgctaggtaaatttcacatctc 44836633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 22386823 - 22386744
Alignment:
Q  11 gcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||||  |||||||||| ||||    
T  22386823 gcataaaccatttgttttcccctttcctacgacgtaggagtgacattccaaacgacatcgttaaataaatttcacatctc 22386744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 24557023 - 24557110
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacg 242  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||| | || ||||||||| |||||    
T  24557023 gaagcttagctacacaaaaagaattgcgttttgattttactaggacctattttaaaaatagaatcgagcatcatatttcatataaacg 24557110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 42740186 - 42740256
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaat 80  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||    
T  42740186 cgcataaacaattcgttttcccctttcctacgacgtaggagtgacattccaaatgaaactgttaggtaaat 42740256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 17674197 - 17674110
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacg 242  Q
    |||| ||||||||||| ||||||||| ||||||||||| || || |||||||||||||||||  |||||||| |||||||||| ||||    
T  17674197 gaagtttaactacacaaaaagaattgtgttttgattttactggagcctattttaaaaatagagtcgaacctcttatttcataggaacg 17674110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 24556882 - 24556957
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |  |||||||  |||||||||||||||||||||||  |||||||||||||||||||    
T  24556882 cgcataaaccattcgtttttctttttcctatcacgtaggagtgacattccaaacgacaccgttaggtaaatttcac 24556957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 26486361 - 26486286
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |  |||||| ||||||||||||    
T  26486361 cgcataaactattcgttttcctctttcctacgacgtagaagtgacattccaaatgacaccgtttggtaaatttcac 26486286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 37873599 - 37873505
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgc 249  Q
    |||||||||||||||| ||| |||| | |||| ||||| || |  |||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  37873599 gaagcttaactacacacaaaaaattacatttttattttactggggcctattttaaaaatagaatcgagcctcctatttcatagaaacggccctgc 37873505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 42740326 - 42740420
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgc 249  Q
    |||| ||||| ||||| ||| |||| |||||| ||||| || |  |||||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  42740326 gaagtttaaccacacaaaaaaaattacgtttttattttactggggcctattttaaaaatagaaccgagcctcctatttcataggaacggccctgc 42740420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 37873749 - 37873665
Alignment:
Q  11 gcataaaccattcgttttcccctttcct-----acgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||| |||||||  || |||| ||||||||||| ||||    
T  37873749 gcataaaccattcgttttcccctttcctacgatacgacgtaggagtgacatgccaaacgacactgttacgtaaatttcacctctc 37873665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 27703517 - 27703437
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||| |||||| | || ||| | |||||||| ||||||||  || |||||||||||||||| ||||    
T  27703517 cgcataaaccattcgtttttcccttttccaccacggaagagtgacaatccaaacgacactgttaggtaaatttcacctctc 27703437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 22386675 - 22386597
Alignment:
Q  159 cttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    |||||||||| | ||| |||||| |||||||||| ||    ||||||||||||||| |||||| |||||||||||||||    
T  22386675 cttaactacaaaaaaaaaattgcattttgattttactgcggcctattttaaaaataaaaccgagcctcctatttcatag 22386597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 26486218 - 26486125
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    |||||||| ||||||| ||| || ||| |||| ||||| || |  |||||||| ||||||||||||| |||||||||| |||| ||||| ||||    
T  26486218 gaagcttagctacacacaaaaaaatgcatttttattttactcgggcctattttgaaaatagaaccgagcctcctattttataggaacggccctg 26486125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 84 - 160
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| |||| ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  84 cgcataaaccattcgttttacccttttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 48722357 - 48722281
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  48722357 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 48722281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 17325921 - 17325996
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  17325921 cgcataaaccattcgctttcccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcac 17325996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 10033623 - 10033702
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  10033623 cgcataaaccattcgttttccc-tttcctacgacgtaggagtgacattccaaacgaaaccgttaggtaaatttcacctctc 10033702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 18873546 - 18873611
Alignment:
Q  20 attcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  18873546 attcgttttcccctttcctacgacgtaggagtgacattccaaacgaaaccgttaggtaaatttcac 18873611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 17326075 - 17326152
Alignment:
Q  164 ctacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaac 241  Q
    ||||||| ||||||||||||||||||||| || || |||||||||||||||||||||| |||| ||||||||||||||    
T  17326075 ctacacaaaaagaattgcgttttgattttactggagcctattttaaaaatagaaccgagcctcatatttcatagaaac 17326152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 16515726 - 16515814
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||| ||||||| ||| || |||||||| ||||| || |  |||||||||||||||||||||||||||||||||||||| |||||    
T  16515726 gaagcttagctacacacaaaaaaatgcgtttttattttactcgggcctattttaaaaatagaaccgaacctcctatttcataggaacgg 16515814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 7390388 - 7390309
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||  |||||||| |||||||||| ||||    
T  7390388 cgcataaaccattcgttttcccctttcctgcgacatagaagtgacatt-caaacgacaccgttagataaatttcacctctc 7390309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 138219 - 138270
Alignment:
Q  9 ccgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaa 61  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  138219 ccgcataaaccattcgttttccccttt-ctacgaagtagtagtgacattccaa 138270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 7390244 - 7390156
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||| ||||||| ||| |||| |||||| |||||  |||   ||||||||||||||||||||| ||| ||||||||||| |||||    
T  7390244 gaagcttagctacacacaaaaaattacgtttttattttattagggactattttaaaaatagaaccgagccttctatttcataggaacgg 7390156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 8379286 - 8379197
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtc 245  Q
    ||||| |||||||||| ||| || | | |||| ||||| ||||| ||||||||||||| ||| ||||| |||||||||||||  |||||||    
T  8379286 gaagcataactacacaaaaaaaaatccatttttattttactaga-cctattttaaaaagagagccgaatctcctatttcataagaacggtc 8379197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 931636 - 931677
Alignment:
Q  201 ctattttaaaaatagaaccgaacctcctatttcatagaaacg 242  Q
    |||||||||||| ||| |||||||||||||||||||| ||||    
T  931636 ctattttaaaaagagagccgaacctcctatttcataggaacg 931677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 3349571 - 3349479
Alignment:
Q  156 aagcttaactacacagaaagaattgcgttttgattttcctaga-acctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||| ||||||| ||| ||||||||||| |||||  | || |||||||||||| | ||| |||| |||||||||||||||  |||||||||    
T  3349571 aagcttagctacacaaaaa-aattgcgtttttattttattggagacctattttaaatagagagccgagcctcctatttcatagggacggtcctg 3349479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 16515596 - 16515656
Alignment:
Q  25 ttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||| |||||| |||||| ||||||||||||||||||| |  ||| |||| ||||||||||    
T  16515596 tttttcccttttctacgatgtaggagtgacattccaaatgacaccattagctaaatttcac 16515656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 6294330 - 6294410
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  6294330 cgcataaactattcgttttcccctttcccacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctc 6294410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 3748554 - 3748476
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||||||| |  ||||||||||||||||||| ||||    
T  3748554 cataaactattcgttttcccctttcatgcgacgtaggagtgacattccaaatgacaccgttaggtaaatttcacatctc 3748476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 30915349 - 30915277
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaattt 82  Q
    |||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||  ||||||| ||||||||    
T  30915349 cgcataaaccattcattatcccctttcttacgacgtagaagtgacatttcaaacgacaccgttatgtaaattt 30915277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 21946183 - 21946261
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| ||||||||||| ||||||||| ||||| |||||||||| ||||||  ||||||||||||||| ||| ||||    
T  21946183 cgcataaacaattcgttttcctctttcctac-acgtaagagtgacatt-caaacgacaccgttaggtaaattccacctctc 21946261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 3748411 - 3748329
Alignment:
Q  155 gaagcttaactacacagaaagaat-tgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcata 236  Q
    |||||||| ||||||| ||| ||  ||| |||| ||||| || | ||||||||||||||||||||||| ||||||||||||||    
T  3748411 gaagcttagctacacacaaaaaaaatgcatttttattttactcggacctattttaaaaatagaaccgagcctcctatttcata 3748329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 29149480 - 29149556
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | |||||||| |||||||| |||||||||||    
T  29149480 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgataccgttacgtaaatttcac 29149556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 22504011 - 22504047
Alignment:
Q  201 ctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    |||||||||||| |||||||| |||||||||||||||    
T  22504011 ctattttaaaaagagaaccgagcctcctatttcatag 22504047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 13997534 - 13997633
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgctgatg 254  Q
    |||||||| ||||||| ||||||||||||||||||||| ||    |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  13997534 gaagcttagctacacaaaaagaattgcgttttgattttactgtggcctattttaaaaatagaaccgagcctcctatttcataggaacggtcctgcagatg 13997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 29480625 - 29480545
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||| || |||||||||| |||||| ||||||||||||||||||||  ||||||||||||| ||||| ||||    
T  29480625 cgcataaaccatttgtcttcccctttcttacgacataggagtgacattccaaacgacaccgttaggtaaagttcacctctc 29480545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 38599479 - 38599551
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||  ||||||||||||||||||    
T  38599479 cataaaccattcgttttcccctttcccacgacgtatgagtggcatttcaaacgacaccgttaggtaaatttca 38599551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 38599593 - 38599665
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||  ||||||||||||||||||    
T  38599593 cataaaccattcgttttcccctttcccacgacgtatgagtggcatttcaaacgacaccgttaggtaaatttca 38599665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 39081617 - 39081704
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||||||||||| ||| ||||  ||||| ||||| || | ||||||||||||||||||||||||||||||||||||||| |||||    
T  39081617 gaagcttaactacacaaaaa-aattatgtttttattttactgggacctattttaaaaatagaaccgaacctcctatttcataggaacgg 39081704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 39081476 - 39081525
Alignment:
Q  13 ataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaa 62  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39081476 ataaaccattagttttcccctttcctacgacgtaggagtgacattccaaa 39081525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 1418985 - 1419065
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| |||| ||||  ||||||||| |||||| ||||||||||||||| |  ||||||||||||||||||||||||    
T  1418985 cgcataaactattcattttttcctttcctatgacgtatgagtgacattccaaatgacaccgttaggtaaatttcacttctc 1419065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 13997390 - 13997469
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||   ||  ||||||||||||||| ||||    
T  13997390 cgcataaaccattcgttttccc-tttcctacgacgtatgagtgacattccaaacaacacatttaggtaaatttcacatctc 13997469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36059892 - 36059821
Alignment:
Q  11 gcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaattt 82  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||   |||||| ||||||||    
T  36059892 gcataaaccattcgttttcccttttcccacgacgtatgagtgacattccaaacgacgccgttacgtaaattt 36059821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 1419172 - 1419207
Alignment:
Q  197 gaacctattttaaaaatagaaccgaacctcctattt 232  Q
    ||||||||||||||||||||||||||||||||||||    
T  1419172 gaacctattttaaaaatagaaccgaacctcctattt 1419207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 29480469 - 29480386
Alignment:
Q  165 tacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    |||||| |||||||||| |||||||||| |  |  |||||||||||||||||||| | |||| |||||||||| ||||| ||||    
T  29480469 tacacaaaaagaattgcattttgattttacgggggcctattttaaaaatagaaccaagcctcatatttcataggaacgggcctg 29480386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 26151734 - 26151658
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| |||| ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  26151734 cgcataaaccattcgttttacccttttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 26151658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 36059748 - 36059660
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||| ||| ||||| | ||| ||||||||||| ||||| || | |||||||||||||| |||  ||| ||||||||||||||| |||||    
T  36059748 gaagtttagctacaaaaaaaaaattgcgtttttattttactggtacctattttaaaaaaagagtcgagcctcctatttcatagcaacgg 36059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 36438337 - 36438264
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  36438337 cataaaccattcgttttcccttttcctacgacgtaggagtgacattccaaatgacaccgttaggtaaatttcac 36438264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 7366763 - 7366843
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||| ||||    
T  7366763 cgcataaaccattcattttcccctttcctgcgacgtaggagtgacattccaaacgacaccgtaaggtaaatttcacctctc 7366843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 40737988 - 40737908
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||| ||||    
T  40737988 cgcataaactattcgttttcccctttcctacgacgtaggagtgacatttcaaatgacaccgttaggtaaatttcacctctc 40737908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 26633439 - 26633519
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  26633439 cgcataaaccattcatttttccctttcccacgacgtatgagtgacattccaaacgacaccgttaagtaaatttcacctctc 26633519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 7370013 - 7370094
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    ||||||||  ||||||  |||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||    
T  7370013 gaagcttagttacacaagaagaattgcgttttgattttactagatc-tattttaaaaatagaaccgagcctcctatttcatag 7370094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 18895385 - 18895334
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaa 61  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  18895385 cgcataaacaattcgttttccccttacctacgacgtaggagtgacattccaa 18895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 32956851 - 32956927
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||||||||||||||||||||| || ||| | ||||||| | ||||||||  || ||||||||||||||||    
T  32956851 cgcataaaccattcgttttcccctttcccacaacggatgagtgacaaatccaaacgacactgttaggtaaatttcac 32956927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 40737816 - 40737760
Alignment:
Q  180 gcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcata 236  Q
    ||||||| ||||| || ||| ||||||||||||||||||||| ||||||||||||||    
T  40737816 gcgtttttattttactcgaatctattttaaaaatagaaccgagcctcctatttcata 40737760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 40841233 - 40841157
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||||||||||||||| ||| || |||||| | ||||||||  ||| ||||| |||||||||    
T  40841233 cgcataaaccattcgttttcccctttcctacaacggagaagtgacaaatccaaacgagaccattaggaaaatttcac 40841157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 36438194 - 36438117
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttc 233  Q
    |||||||| ||||||| ||| |||||| |||| ||||| ||    |||||||||||||||||||||| |||||||||||    
T  36438194 gaagcttagctacacacaaa-aattgcatttttattttactgaggcctattttaaaaatagaaccgagcctcctatttc 36438117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 4100228 - 4100264
Alignment:
Q  201 ctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  4100228 ctattttaaaaagagagccgaacctcctatttcatag 4100264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 12251275 - 12251199
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  12251275 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgtcaccgttagataaatttcac 12251199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 33419104 - 33419028
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| || ||| |||| ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  33419104 cgcataaaccattcgttttaccattttctacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 33419028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 40001553 - 40001466
Alignment:
Q  156 aagcttaactacacagaaagaattgcgttttgattttcctagaa-cctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    ||||||||||||||| ||| |||||| |||| |||||  | ||| ||||||||||| | |||  |||||||||||||||||||| ||||    
T  40001553 aagcttaactacacaaaaa-aattgcatttttattttattggaaacctattttaaatagagagtcgaacctcctatttcatagagacgg 40001466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 3628735 - 3628655
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||    
T  3628735 cgcataaaccattcgtttttccgtttcctacgacgtaggagtgacattccaaacgacacagttaggtaaatttcacctctc 3628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 36515143 - 36515069
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  36515143 cgcataaatcatttgttttcccatttcctacgacgtaggagtgacattccaaacgacaccgttagataaatttca 36515069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 42076185 - 42076260
Alignment:
Q  9 ccgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||| |||||||||||||||| |||||| ||||||||||||||||||| |  |||||||||||||||||||    
T  42076185 ccgcataaactattcgttttccccttttctacga-gtaggagtgacattccaaatgacaccgttaggtaaatttcac 42076260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 35875147 - 35875216
Alignment:
Q  180 gcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgc 249  Q
    ||||||| ||||| || ||  ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  35875147 gcgtttttattttactcgagtctattttaaaaatagaaccgaacctcctatttcatagtaacggccctgc 35875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 29372433 - 29372508
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||||||||||| ||||||||||| | |||| | |||||||||| ||||||||  ||| |||||||||||||||    
T  29372433 cgcataaaccattcattttcccctttgccacgatgaaggagtgacaatccaaacgacaccattaggtaaatttcac 29372508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 42076330 - 42076408
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttca 234  Q
    |||||||| ||||||| |||||||||||||||||||| | | |  |||||||||| |||||||||||||||| |||||||    
T  42076330 gaagcttatctacacaaaaagaattgcgttttgatttac-tggggcctattttaacaatagaaccgaacctcttatttca 42076408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 32098165 - 32098085
Alignment:
Q  11 gcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcacttctc 90  Q
    |||||||||||||||||||||| |||| || ||  ||||||||| | ||||||||  ||||||| ||||||||||||||||    
T  32098165 gcataaaccattcgttttccccattcccacaacagaggagtgacgaatccaaacgacaccgttacgtaaatttcacttctc 32098085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 33453021 - 33453064
Alignment:
Q  200 cctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||    
T  33453021 cctattttaaaaagagaactgaacctcctatttcataggaacgg 33453064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 18112378 - 18112424
Alignment:
Q  188 attttcctagaacctattttaaaaatagaaccgaacctcctatttca 234  Q
    ||||| |||| |||||||||||||| ||| |||||||||||||||||    
T  18112378 attttactaggacctattttaaaaagagagccgaacctcctatttca 18112424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 36514978 - 36514905
Alignment:
Q  174 agaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||||||||||||||| ||  |  ||| |||||||||| |||| ||||||||||||||||| ||||| ||||    
T  36514978 agaattgcgttttgattttactgaagtctaatttaaaaata-aaccaaacctcctatttcataggaacggccctg 36514905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 44665033 - 44664957
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | |||||||| |||| |||| ||||||||||    
T  44665033 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgataccattagataaatttcac 44664957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 42009248 - 42009170
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||  | |||||| |||||||||| ||||    
T  42009248 cataaaccattcgttttcccctttcctacgacgtaagagtgacattccaaacgaaatcgttagataaatttcacctctc 42009170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 46904819 - 46904898
Alignment:
Q  11 gcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| ||  |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  46904819 gcataaaccttttatttttccctttcctacgacgtaggagtgacattccaaacgacaccgttaggtaaatttcacctctc 46904898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 50677302 - 50677228
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  || ||||| |||||||||    
T  50677302 cgcataaacaattcgttttcccctttcctacgatgtaggagtgacattccaaacgaaactgttagataaatttca 50677228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 7767144 - 7767222
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||||||||| |  || |||||||||||||||| ||||    
T  7767144 cataaactattcgttttcccatttcctaagacgtaggagtgacattccaaatgacacagttaggtaaatttcacatctc 7767222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 46904963 - 46905051
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||  ||||||| ||| |||||  |||| ||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||    
T  46904963 gaagcttcgctacacataaaaaattgaatttttattttactggaacctattttaaaaatagaaccgagcctcctatttcataggaacgg 46905051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 51147014 - 51147085
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaattt 82  Q
    |||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||  ||||||||||||||||    
T  51147014 cgcataaaccattcgttttcccttttc-tacgacatagaagtgacattccaaacgacaccgttaggtaaattt 51147085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 36538174 - 36538120
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacg 64  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  36538174 cgcataaaccattcgttttcccctttcctacgaagcaggagtgacattctaaacg 36538120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 27303436 - 27303501
Alignment:
Q  183 ttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||    
T  27303436 tttttattttactagaacctattttaaaaatagaaccgagcctcctatttcattggaacggccctg 27303501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 7767287 - 7767375
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||| ||||||| ||| || |||||||| || || || |  |||||||||||||||||||||| ||||||||||||||| |||||    
T  7767287 gaagcttagctacacacaaaaaaatgcgtttttatcttacttgggcctattttaaaaatagaaccgagcctcctatttcataggaacgg 7767375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 27303263 - 27303341
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||  ||| ||||||||||||||| ||||    
T  27303263 cgcataaactatttgttttccc-tttcctacgacgtaggagtgacatt-caaacgacaccattaggtaaatttcacctctc 27303341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 42009126 - 42009039
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacg 242  Q
    |||||||||||||||| ||| | |||  |||| ||||| ||  | | ||||||||||||||||||||||||| |||||||||| ||||    
T  42009126 gaagcttaactacacaaaaaaatttgtatttttattttactgaagcttattttaaaaatagaaccgaacctcatatttcataggaacg 42009039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 51147205 - 51147252
Alignment:
Q  201 ctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  51147205 ctattttaaaaatagaaccgagcctcctatttcataggaacggccctg 51147252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 52655110 - 52655034
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || || |||||||||| | | |||||| ||||||||| ||||||||||    
T  52655110 cgcataaaccattcgttttacccttttccacaacataggagtgacaaattcaaacgataccgttagataaatttcac 52655034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 15987276 - 15987321
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgaca 55  Q
    ||||||||||||||||||| |||||||| || ||| ||||||||||    
T  15987276 cgcataaaccattcgtttttccctttcccacaacggaggagtgaca 15987321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 48626827 - 48626779
Alignment:
Q  200 cctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||||||| | |||||||| |||||||||||||||  |||||||||    
T  48626827 cctattttaaatagagaaccgagcctcctatttcatagggacggtcctg 48626779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 35653968 - 35653888
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |  |||||||| |||||||||| ||||    
T  35653968 cgcataaactattcgtttttccctttcctacgacgtaggagtgacatttcaaatgacaccgttagataaatttcacctctc 35653888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 10575511 - 10575437
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttca 84  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||| || |  ||||| ||||||||||||    
T  10575511 cgcataaaccattcgttttcccctttcccacgacggaggagtgacaatccgaatgacaccgtcaggtaaatttca 10575437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 22423764 - 22423837
Alignment:
Q  12 cataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcac 85  Q
    |||||| |||||||||| || |||| |||||| ||||||||||||||||||||  |||||||| ||||||||||    
T  22423764 cataaatcattcgtttttccatttcatacgacataggagtgacattccaaacgacaccgttagataaatttcac 22423837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 24449347 - 24449416
Alignment:
Q  180 gcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctgc 249  Q
    ||||||| ||||| || ||  ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  24449347 gcgtttttattttactcgagtctattttaaaaatagaaccgaacctcctatttcatagtaacggccctgc 24449416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 35653823 - 35653735
Alignment:
Q  155 gaagcttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacgg 243  Q
    |||||||||||||||| ||| || || ||||| ||||| || |  ||||| |||||||||||||||| ||| ||||||||||| |||||    
T  35653823 gaagcttaactacacacaaaaaaatgtgtttttattttactcgggcctatcttaaaaatagaaccgagccttctatttcataggaacgg 35653735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 5545405 - 5545481
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||||||| |||  || ||| ||||||||| | | ||||||  |||||||||||||||||||    
T  5545405 cgcataaaccattcgttttcccccttctcacaacggaggagtgacaaattcaaacgacaccgttaggtaaatttcac 5545481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 21791535 - 21791456
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgacattccaaacggtaccgttaggtaaatttcacttctc 90  Q
    ||||||||||||| |||| ||||||||| |||||| | |||||||| ||||||||  |  |||||||||||||||| ||||    
T  21791535 cgcataaaccatttgttt-cccctttcccacgacgaatgagtgacaatccaaacgacattgttaggtaaatttcacctctc 21791456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 22423938 - 22423976
Alignment:
Q  199 acctattttaaaaatagaaccgaacctcctatttcatag 237  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  22423938 acctattttaaaaatagaaccgagactcctatttcatag 22423976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 23256825 - 23256911
Alignment:
Q  160 ttaactacacagaaagaattgcgttttgattttcctagaacctattttaaaaatagaaccgaacctcctatttcatagaaacggtcctg 248  Q
    ||||||||||| ||| |||| |||||| ||||| ||||  ||||||||||||| ||| |||| |||||||||||| || ||| ||||||    
T  23256825 ttaactacacaaaaa-aattacgtttt-attttactagggcctattttaaaaagagagccgagcctcctatttcacaggaacagtcctg 23256911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 41038327 - 41038403
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||| | ||||||||  |||||||| ||||||||||    
T  41038327 cgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacaccgttagataaatttcac 41038403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 1138 - 1214
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || || |||||||||| | ||||||||  |||||||| ||||||||||    
T  1138 cgcataaaccattcgttttacccttttccacaacataggagtgacaaatccaaacgacaccgttagataaatttcac 1214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 22792 - 22716
Alignment:
Q  10 cgcataaaccattcgttttcccctttcctacgacgtaggagtgac-attccaaacggtaccgttaggtaaatttcac 85  Q
    ||||||||||||||||||| |||||| | || || |||||||||| | | ||||||  |||||||| ||||||||||    
T  22792 cgcataaaccattcgttttacccttttccacaacataggagtgacaaattcaaacgacaccgttagataaatttcac 22716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University