View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_39 (Length: 258)
Name: NF11885_high_39
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 8445876 - 8445964
Alignment:
| Q |
146 |
ggccttctaattattattatccaagttaagtgattttgttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaact |
235 |
Q |
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| T |
8445876 |
ggccttctaattattattatccaagttaagtgattt-gttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaact |
8445964 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8445831 - 8445874
Alignment:
| Q |
1 |
tccctataatatttggcgctctaagcctactaaagcacacacaa |
44 |
Q |
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| T |
8445831 |
tccctataatatttggcgctctaagcctaccaaagcacacacaa |
8445874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 43061967 - 43062010
Alignment:
| Q |
119 |
tttagattttggtattgttttgtgtttggccttctaattattat |
162 |
Q |
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| T |
43061967 |
tttagattttggtattgttttgtggttggtcttctaattattat |
43062010 |
T |
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