View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11885_high_41 (Length: 254)

Name: NF11885_high_41
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11885_high_41
NF11885_high_41
[»] chr7 (13 HSPs)
chr7 (19-254)||(3617430-3617665)
chr7 (19-254)||(29058123-29058358)
chr7 (19-253)||(29071351-29071585)
chr7 (19-250)||(28956792-28957023)
chr7 (36-254)||(29068906-29069124)
chr7 (21-250)||(3618990-3619219)
chr7 (23-254)||(29110839-29111070)
chr7 (21-253)||(29073061-29073293)
chr7 (23-253)||(29078088-29078318)
chr7 (21-253)||(29102024-29102256)
chr7 (21-229)||(29116193-29116401)
chr7 (36-253)||(29098300-29098517)
chr7 (27-254)||(29066732-29066959)
[»] chr4 (3 HSPs)
chr4 (19-253)||(11851587-11851821)
chr4 (36-254)||(11854300-11854518)
chr4 (21-253)||(11849875-11850107)
[»] chr3 (1 HSPs)
chr3 (21-178)||(24241051-24241202)
[»] chr8 (1 HSPs)
chr8 (23-109)||(11654929-11655015)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 3617430 - 3617665
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3617430 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 3617529  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3617530 agagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 3617629  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatgatac 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  3617630 gaaagtgcaacgactggtgtatcatcagaatgatac 3617665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 29058123 - 29058358
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  29058123 cttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgggcaaggaggttgataatcatgttcttcatcacatcccattgt 29058222  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  29058223 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaattttgttgagacatctgctcttatcgttgaaccatcctgtg 29058322  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatgatac 254  Q
    ||||||||||||||||| || |||||||||||||||    
T  29058323 gaaagtgcaacgactggagtgtcatcagaatgatac 29058358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 29071351 - 29071585
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29071351 cttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccatcgt 29071450  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
     |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  29071451 agagtcacactcatcaaccacagtggccactacacttcttccattggcacttatggtaatcttgttgagacatctgctcttgtcgttgaaccatccggtg 29071550  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||||| ||||| || ||||||||||||||    
T  29071551 gaaagtgcaacaactggagtgtcatcagaatgata 29071585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 28957023 - 28956792
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    ||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28957023 cttgaggcacacctaaagcttcccacacagccttggaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatccctttgt 28956924  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
     ||||||||||||||||| ||| ||||||| |||||||| ||||| ||||| || ||||| || || ||||| ||||||| || |||||||||||| |||    
T  28956923 ggagtcacactcatcaacaaccatggccaccacacttttcccattcgcactaattgtaatgtttttgagacacctgctctcgtggttgaaccatccggtg 28956824  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatg 250  Q
    ||||||||||| ||||| || |||||||||||    
T  28956823 gaaagtgcaacaactggagtgtcatcagaatg 28956792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 36 - 254
Target Start/End: Original strand, 29068906 - 29069124
Alignment:
Q  36 gctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaa 135  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||    
T  29068906 gctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaa 29069005  T
Q  136 ccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaagtgcaacgactgg 235  Q
    | ||| ||||||| |||||||||||||| |||||||||||||| ||||| || || |||||||||  |||||||||||| || || |||||||| || ||    
T  29069006 caaccatggccaccacactttttccattcgcacttatggtaatgttgttgaggcacctgctcttgcggttgaaccatccggttgagagtgcaacaacggg 29069105  T
Q  236 tgtatcatcagaatgatac 254  Q
     || ||||| |||||||||    
T  29069106 agtgtcatcggaatgatac 29069124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 3619219 - 3618990
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||| ||| ||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||||||||||||||||| |||||||||||| || |    
T  3619219 tgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttggtaatcatgttctttatcacatcccatcgtag 3619120  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    |||| ||||||||||| |||||||| || |||||| ||||||| || || |||||||| |||||||||||||| || |||| |||||||||||| |||||    
T  3619119 agtcgcactcatcaacaaccgtggcaaccacacttcttccattcgcgctgatggtaattttgttcagacatctacttttgttgttgaaccatccagtgga 3619020  T
Q  221 aagtgcaacgactggtgtatcatcagaatg 250  Q
    ||||||||| || || || |||||||||||    
T  3619019 aagtgcaacaacaggagtgtcatcagaatg 3618990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 254
Target Start/End: Original strand, 29110839 - 29111070
Alignment:
Q  23 aggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgag 122  Q
    ||||||||| || |||||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||| | ||||||||||||| || | ||     
T  29110839 aggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttggacacggtggttggtagtcatgctgttcatcacatccctttctagaa 29110938  T
Q  123 tcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaa 222  Q
    || ||||| ||||| ||| ||||||| ||| || ||||||| ||||| || ||||| ||||| ||||| ||||| || | |||||||||||| |||||||    
T  29110939 tcgcactcgtcaacaaccatggccacgacatttcttccattagcactgattgtaatgttgtttagacacctgcttttatggttgaaccatccggtggaaa 29111038  T
Q  223 gtgcaacgactggtgtatcatcagaatgatac 254  Q
    ||||||| || || || |||||||||||||||    
T  29111039 gtgcaacaacaggagtgtcatcagaatgatac 29111070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 29073293 - 29073061
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||   | | |    
T  29073293 tgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttgataatcatgttctttatcgcatcctgctctcg 29073194  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    | |||||||||||||| ||  ||||||| |||||| |||| || ||||| ||  |||| ||||| |||||||| ||||||| ||||||||||||  | ||    
T  29073193 aatcacactcatcaacaactttggccaccacacttcttccgttcgcactaatcttaattttgttgagacatctactcttgttgttgaaccatccactaga 29073094  T
Q  221 aagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||| ||||| || ||||||||||||||    
T  29073093 aagtgcaacaactggagtgtcatcagaatgata 29073061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 29078088 - 29078318
Alignment:
Q  23 aggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgag 122  Q
    ||||||||| || |||||||||||||| || |||||||||||||||||||||| |||||| |||||||| ||||| | ||||||||||||| || | ||     
T  29078088 aggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttgtacaaggtggttggtagtcatgctgttcatcacatccctttctagaa 29078187  T
Q  123 tcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaa 222  Q
    || ||||| || || ||| ||||||| ||| || ||||||| ||||| || ||||| ||||| ||||| ||||| || | |||||||||||| |||||||    
T  29078188 tcgcactcgtcgacaaccatggccacgacatttcttccattagcactgattgtaatgttgtttagacacctgcttttatggttgaaccatccggtggaaa 29078287  T
Q  223 gtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||| || || || ||||| ||||||||    
T  29078288 gtgcaacaacaggagtgtcatctgaatgata 29078318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 29102256 - 29102024
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||   | | |    
T  29102256 tgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttgataatcatgttctttatcgcatcctgctctcg 29102157  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    | |||||||||||||| ||  ||||||| || ||| |||| || ||||| ||  |||| ||||| |||||||| ||||||| |||||||||||| || ||    
T  29102156 aatcacactcatcaacaactttggccaccacgcttcttccgttcgcactaatcttaattttgttgagacatctactcttgttgttgaaccatccagtaga 29102057  T
Q  221 aagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||| || || || ||||| ||||||||    
T  29102056 aagtgcaacaaccggggtgtcatcggaatgata 29102024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 29116401 - 29116193
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||   | | |    
T  29116401 tgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttgataatcatgttctttatcgcatcctgctctcg 29116302  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    | |||||||||||||| ||  ||||||| |||||| |||| || ||||| ||  |||| ||||| |||||||| ||||||| |||||||||||| || ||    
T  29116301 aatcacactcatcaacaactttggccaccacacttcttccgttcgcactaatcttaattttgttgagacatctactcttgttgttgaaccatccagtaga 29116202  T
Q  221 aagtgcaac 229  Q
    |||||||||    
T  29116201 aagtgcaac 29116193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 253
Target Start/End: Complemental strand, 29098517 - 29098300
Alignment:
Q  36 gctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaa 135  Q
    |||| ||| ||| |||| || |||||||| ||||||||  |||||||||||||||||||||| |||| |||||||| |||||| ||||||| |||||| |    
T  29098517 gcttcccatacaaccttggaggcatcaactatgttgttgcgacaaggaggttggtaatcatgatctttatcacatctcattgtagagtcacgctcatcga 29098418  T
Q  136 ccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaagtgcaacgactgg 235  Q
    | ||| ||||||| |||||| ||||||| ||| | |  ||||| ||||  |||||||| |||||||  | ||||||||   ||||||||||||| ||||     
T  29098417 ctaccatggccaccacacttcttccatttgcattcactgtaatgttgtgaagacatctactcttgttatcgaaccatcagatggaaagtgcaacaactga 29098318  T
Q  236 tgtatcatcagaatgata 253  Q
     ||||| |||||||||||    
T  29098317 agtatcgtcagaatgata 29098300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 254
Target Start/End: Complemental strand, 29066959 - 29066732
Alignment:
Q  27 acacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcac 126  Q
    ||||| |||||||||||||||||| | ||||||||||||||||| || | ||| |||||||| || ||||||||| ||||||| ||| ||| ||||||||    
T  29066959 acacctaaggctttccacacagccattgaagcatcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcac 29066860  T
Q  127 actcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaagtgc 226  Q
    | |||||||| ||| | || || |||||||  |||||  |||||||||| || ||||  ||||| || |||||    ||||||||||| |||||||||||    
T  29066859 attcatcaactaccattgcaaccacactttgaccatttccacttatggtgatgttgtgaagacaccttctcttagtattgaaccatccagtggaaagtgc 29066760  T
Q  227 aacgactggtgtatcatcagaatgatac 254  Q
     || || || |||||||| |||| ||||    
T  29066759 caccacaggcgtatcatcggaataatac 29066732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 11851821 - 11851587
Alignment:
Q  19 cttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgt 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11851821 cttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccatcgt 11851722  T
Q  119 tgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtg 218  Q
     |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  11851721 agagtcacactcatcaaccacagtggccaccacacttcttccattggcacttatggtaatcttgttgagacatctgctcttgtcgttgaaccatccggtg 11851622  T
Q  219 gaaagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||||| ||||| || ||||||||||||||    
T  11851621 gaaagtgcaacaactggagtgtcatcagaatgata 11851587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 254
Target Start/End: Complemental strand, 11854518 - 11854300
Alignment:
Q  36 gctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaa 135  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||    
T  11854518 gctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaa 11854419  T
Q  136 ccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtggaaagtgcaacgactgg 235  Q
    | ||| ||||||| |||||||||||||| |||||||||||||| ||||| || || |||||||||| |||||||||||| || || |||||||| || ||    
T  11854418 caaccatggccaccacactttttccattcgcacttatggtaatgttgttgaggcacctgctcttgtggttgaaccatccggttgagagtgcaacaacggg 11854319  T
Q  236 tgtatcatcagaatgatac 254  Q
     || ||||| |||||||||    
T  11854318 agtgtcatcggaatgatac 11854300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 11849875 - 11850107
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||   | | |    
T  11849875 tgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaaggaggttgataatcatgttctttatcgcatcctgctctcg 11849974  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaatcttgttcagacatctgctcttgtcgttgaaccatcctgtgga 220  Q
    | |||||||||||||| ||  ||||||| |||||| |||| || ||||| ||  |||| ||||| |||||||| ||||||| |||||||||||| || ||    
T  11849975 aatcacactcatcaacaactttggccaccacacttcttccgttcgcactaatcttaattttgttgagacatctactcttgttgttgaaccatccagtaga 11850074  T
Q  221 aagtgcaacgactggtgtatcatcagaatgata 253  Q
    ||||||||| ||||| || ||||||||||||||    
T  11850075 aagtgcaacaactggggtgtcatcagaatgata 11850107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 24241051 - 24241202
Alignment:
Q  21 tgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttg 120  Q
    ||||||||||| ||||||||||| ||| |||| ||||| |||||||||||      ||||||||| ||||||||||| ||||||||||||||||||||      
T  24241051 tgaggcacacctaaggctttccatacaaccttggaagcctcaacaatgtt------acaaggaggctggtaatcatgctcttcatcacatcccattgtga 24241144  T
Q  121 agtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 178  Q
    |||||||||||||||| | | ||||||| |||||| | |||||||| || ||||||||    
T  24241145 agtcacactcatcaacaaacatggccaccacacttctaccattggcgctgatggtaat 24241202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 11655015 - 11654929
Alignment:
Q  23 aggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcaca 109  Q
    |||||||||||| || ||||| |||||   ||||||||||||||| ||||||| ||||||||||||  ||||||||||  |||||||    
T  11655015 aggcacacccaaagccttccaaacagcagcagaagcatcaacaatattgtttgaacaaggaggttgaaaatcatgttcagcatcaca 11654929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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