View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11885_high_44 (Length: 241)
Name: NF11885_high_44
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 32699564 - 32699752
Alignment:
| Q |
19 |
agagagtcggttaaagatatgatataatataagcgttttcacaaaataacaacctttttgttgattcttggattcccaataaaaataacttcgtaaagct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32699564 |
agagagtcggttaaagatatgatataatataagcgttttcacaagataacaacctttttattgattcttggattcccaataaaaataactttgtaaagct |
32699663 |
T |
|
| Q |
119 |
tggtcaaaaaacaaatttaccttctaacaaatgtttaatgtttggttgagcttattttttgtttgggttacaatagttgagcttattaa |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32699664 |
tggtcaaaaaacaaatttaggttctaacaaatgtttaatatttggttgagcttattttttgtttgggttacaatagttgaacttattaa |
32699752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 32699460 - 32699556
Alignment:
| Q |
19 |
agagagtcggttaaagatatgatataatataagcgttttcacaaaataacaacctttttgttgattcttggattcccaataaaaataacttcgtaaa |
115 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| | | ||| |||||||||||||| ||||||| |
|
|
| T |
32699460 |
agagaatcagttaaagatatgatataatataagcgtttttacacaataacaacttttttgttgattttcgaatttccaataaaaataacctcgtaaa |
32699556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University