View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_47 (Length: 238)
Name: NF11885_high_47
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 3813015 - 3812810
Alignment:
| Q |
19 |
acatcacaaccagaaggttcaaatgggaggaaaaagaaaacttatgttagaatggagggttatgtgtcaacccaacagtaggaatcatggaccactctag |
118 |
Q |
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| T |
3813015 |
acatcacaaccagaaggttcaaatgggaagaaaaggaaaacttctgttagagttgagggttctgtgtcaacccaacagtaggaatcatggaacactttag |
3812916 |
T |
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| Q |
119 |
atataatgcttattttgatgtcttttttatgtaatgcctaagtgcatacatgttatgtagtgcctaagtgcaagcaacaatttacttattatgcctatta |
218 |
Q |
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|||| |||| | ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||| |||| |
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| T |
3812915 |
atattatgcctgttttgatgtctttttgatgtaatgcctaagtgaatacatgttatgtaatgcctaagtgcaagctacaatctacttattatgcttattt |
3812816 |
T |
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| Q |
219 |
tgatgt |
224 |
Q |
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|||||| |
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| T |
3812815 |
tgatgt |
3812810 |
T |
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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 23704468 - 23704275
Alignment:
| Q |
19 |
acatcacaaccagaaggttcaaatgggaggaaaaagaaaacttatgttagaatggagggttatgtgtcaacccaacagtaggaatcatggaccactctag |
118 |
Q |
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|||||||||||||||||| ||||||||| ||||| ||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
23704468 |
acatcacaaccagaaggtgcaaatgggaagaaaagaaaaacttttgttagagttgagggttctgtgtcaacccaacagtaggaatcatggaaaacttc-- |
23704371 |
T |
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| Q |
119 |
atataatgcttattttgatgtcttttttatgtaatgcctaagtgcatacatgttatgtagtgcctaagtgcaagcaacaatttacttattatgcctatta |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||||||| |||| |
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| T |
23704370 |
----------tattttgatgtctttttgatgtaatgcctaagtgcatacatgttatgtaatgcctaagtgcaagatacagtctacttattatgcttattt |
23704281 |
T |
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