View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_49 (Length: 237)
Name: NF11885_high_49
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 7675232 - 7675015
Alignment:
| Q |
1 |
gtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtg |
100 |
Q |
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| T |
7675232 |
gtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtg |
7675133 |
T |
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| Q |
101 |
atgaagttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatgatttgtgttgtgtt |
200 |
Q |
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| T |
7675132 |
atgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatgatttgtgttgtgtt |
7675033 |
T |
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| Q |
201 |
gtgactacgattatgaag |
218 |
Q |
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| T |
7675032 |
gtgactatgattatgaag |
7675015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 7659599 - 7659420
Alignment:
| Q |
7 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
106 |
Q |
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| T |
7659599 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
7659500 |
T |
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| Q |
107 |
ttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
186 |
Q |
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| T |
7659499 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatg |
7659420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 7624086 - 7624265
Alignment:
| Q |
7 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
106 |
Q |
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||||||| ||||| ||| |||||||| ||||| || | |||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
7624086 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
7624185 |
T |
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| Q |
107 |
ttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
186 |
Q |
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|||| ||||||| |||| | ||||||||| | ||| ||||| || |||||| | |||||||| ||||||||||||| |
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| T |
7624186 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccatagagacatg |
7624265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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