View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_50 (Length: 237)
Name: NF11885_high_50
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 45130920 - 45131134
Alignment:
| Q |
1 |
agactaatatcttttaccatgttgattgtatgaacaggacagtgatatataaaatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatg |
100 |
Q |
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| T |
45130920 |
agactaatatcttttaccatgtcgattgtatcaacgggacaatgatatataaaatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatg |
45131019 |
T |
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| Q |
101 |
ttggagttatggtttgtggtccaagaaaattgagacatgaagttgctaaaatttgtgcttctggtttggctgataatcttcactttgagtccatcagttt |
200 |
Q |
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| T |
45131020 |
ttggagttatggtttgtggtccaagaaaattgagacatgaagttgctaaaatttgtgcttctggtttggctgataatcttcactttgagtccatcagttt |
45131119 |
T |
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| Q |
201 |
taattggtgacctac |
215 |
Q |
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| T |
45131120 |
taattggtgacctac |
45131134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 45114071 - 45114233
Alignment:
| Q |
53 |
aatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgttggagttatggtttgtggtccaagaaaattgagacatgaagttgctaaaat |
152 |
Q |
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| T |
45114071 |
aatttgttaattttgcagaaattctgtttgagtgtgaaggcaaagatgttggagttatgacttgtggtccaagaaaaatgagacatgaagttgctagaat |
45114170 |
T |
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| Q |
153 |
ttgtgcttctggtttggctgataatcttcactttgagtccatcagttttaattggtgacctac |
215 |
Q |
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| T |
45114171 |
atgtgcttctggtttggctgataatcttcacttcgaatcaatcagctttaattggtgatctac |
45114233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 45122537 - 45122604
Alignment:
| Q |
74 |
ttctgtttgagtgtaaagacaaagatgttggagttatggtttgtggtccaagaaaattgagacatgaa |
141 |
Q |
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| T |
45122537 |
ttctttttgagtgtgaaggcaaagatgttgaagttatggtttgttgtccaagataattgagacatgaa |
45122604 |
T |
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