View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_high_8 (Length: 581)
Name: NF11885_high_8
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 9 - 564
Target Start/End: Original strand, 32243019 - 32243574
Alignment:
| Q |
9 |
aatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgagaccgccc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243019 |
aatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgagaccgccc |
32243118 |
T |
|
| Q |
109 |
tctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243119 |
tctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctga |
32243218 |
T |
|
| Q |
209 |
aaccactcagcacactgctaccttcgttttgttcctcaggtccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgttgctg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243219 |
aaccactcagcacactgctaccttcgttttgttcctcagatcccttctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgttgctg |
32243318 |
T |
|
| Q |
309 |
tcgtccttgttgtcgctcttgagtttcagggaactcgacctccgggtttccgccaaggtaaaatacctgccaacacaatttacatgtgattaattgagtt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243319 |
tcgtccttgttgtcgctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacacaatttacatgtgattaattgagtt |
32243418 |
T |
|
| Q |
409 |
gaaaattttataaacattagtaaactgtataaaggttttacaagtctctgcaacagcatcataaaagtaaaatctataacacataatgtaatgtatagtt |
508 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32243419 |
gaaaattttataaacatttgtaaactgtataaaggttttataagtctctgcaacagcatcataaaagtaaaatctataacacataatttaatgtatagtt |
32243518 |
T |
|
| Q |
509 |
atacttatacttactctgggggttgaatcgagctggtttgcaaagctggaggtgtc |
564 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
32243519 |
atacttatacttactctgggggttgaatcgagctggtttacaaagctggaggtgtc |
32243574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 9 - 564
Target Start/End: Original strand, 32248757 - 32249312
Alignment:
| Q |
9 |
aatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgagaccgccc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248757 |
aatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgagaccgccc |
32248856 |
T |
|
| Q |
109 |
tctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctga |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248857 |
tctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctga |
32248956 |
T |
|
| Q |
209 |
aaccactcagcacactgctaccttcgttttgttcctcaggtccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgttgctg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248957 |
aaccactcagcacactgctaccttcgttttgttcctcagatccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgttgctg |
32249056 |
T |
|
| Q |
309 |
tcgtccttgttgtcgctcttgagtttcagggaactcgacctccgggtttccgccaaggtaaaatacctgccaacacaatttacatgtgattaattgagtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32249057 |
tcgtccttgttgtcgctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacacaatttacatgtgattaattgagtt |
32249156 |
T |
|
| Q |
409 |
gaaaattttataaacattagtaaactgtataaaggttttacaagtctctgcaacagcatcataaaagtaaaatctataacacataatgtaatgtatagtt |
508 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32249157 |
gaaaaatttataaacattagtaaactgtataaaggttttataagtctctgcaacagcatcataaaagtaaaatctataacacataatttaatgtatagtt |
32249256 |
T |
|
| Q |
509 |
atacttatacttactctgggggttgaatcgagctggtttgcaaagctggaggtgtc |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
32249257 |
atacttatacttactctgggggttgaatcgagctggtttacaaagttggaggtgtc |
32249312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 564
Target Start/End: Original strand, 32253546 - 32254103
Alignment:
| Q |
12 |
gtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgagaccgccctct |
111 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32253546 |
gtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgagaccgccctct |
32253645 |
T |
|
| Q |
112 |
actctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactctgagctgaaac |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32253646 |
actctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaaac |
32253745 |
T |
|
| Q |
212 |
cactcagcacactgctaccttcgttttgttcctcaggtccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcctctgttgctgtcg |
311 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
32253746 |
cactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggcgtcctcctctacgtccggggaaactgggcctttgttgatgtcg |
32253845 |
T |
|
| Q |
312 |
tccttgttgtcgctcttgagtttcagggaactcgacctccgggtttccgccaaggtaaaatacctgccaacaca-atttacatgtgattaattgagttga |
410 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
32253846 |
tccttgttgtctctcttgagtttcagggaactcgacctctgggtttccgccaaggtaaaatacctgccaacgcatatttacatgtgattaattgagttga |
32253945 |
T |
|
| Q |
411 |
aaattttataaacattagtaaactgtataaaggttttaca-----------agtc-tctgcaacagcatcataaaagtaaaatctataacacataatgta |
498 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||| || | |||| | || | |||||||||||||| ||| ||||||||||||| |
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| T |
32253946 |
aaattttataa--gttagtaaagtgtataatagttctaaattgcaatccgcagtcataaacaccggcatcataaaagtacaatttataacacataat--- |
32254040 |
T |
|
| Q |
499 |
atgtatagttatacttatacttactctgggggttgaatcgagctggtttgcaaagctggaggtgtc |
564 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
32254041 |
---tataattatacttatacttactctgggggttgaatcgagctggtttacaaagttggaggtgtc |
32254103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 30604446 - 30604397
Alignment:
| Q |
120 |
gatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcct |
169 |
Q |
| |
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|||||| ||||| ||||| |||||||||||||||||||||||||| |||| |
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| T |
30604446 |
gatttgactcctttggtcacgtggagattgaagtctcttagctgtgtcct |
30604397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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