View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11885_low_10 (Length: 560)
Name: NF11885_low_10
Description: NF11885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11885_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 9 - 526
Target Start/End: Complemental strand, 1209524 - 1209001
Alignment:
| Q |
9 |
aagatgctcccaaaaaatatcaaaggaagcggttaaacctaatttgagtttattttatgtgttaacctttgatttttagaaaaggagatttcgataatcc |
108 |
Q |
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| T |
1209524 |
aagatgctcccaaaaaatatcaaaggaagcggttaaacctaatttgagtttattttatgtgttaacctttgatttttaagaaaggagattttgataatca |
1209425 |
T |
|
| Q |
109 |
gaagtttcatcaagggagataagtaaattatagttaagaattgttccaccaaaaacctaatttgaatcttattacttttgtgagcatttacttgccaaga |
208 |
Q |
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|||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1209424 |
gaagtttcatca--gaagataagtaaattatagttaaaaattattccaccaaaaacctaatttgagtcttattacttttgtgagcatttacttgccaaga |
1209327 |
T |
|
| Q |
209 |
agtgtttagcaaagtccatcatgttcattttatttttgagagttctcannnnnnn-cctcttgagaggaagttcatgttctcatgagtcttatttcttaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1209326 |
agtgtttagcaaagtccatcatgttcattttatttttgagagttctcattttttttcctcttgagaggaagtccatgttctcatgagtcttatttcttaa |
1209227 |
T |
|
| Q |
308 |
ttagtatatttagcaagtgttacatagtagtatataaccaccgtcaat----ataagactaattatcgttgtctgcaatagaacattcgaattttttata |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1209226 |
ttagtatatttagcaagtgttacatagtagtatataaccactgtcaatcgttataagactaattatcgttgtctgcaatagaacattcgaattttttata |
1209127 |
T |
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| Q |
404 |
cataaaatctagctgagtctcgtgttaacaatgtttttattctaagcatcgatcaatctttaagctagtaaaaacgctaatttagtgctt---taaaatg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
1209126 |
cataaaatctagctgagtctcgtgttaacaatgtttttattctaagcatcgatcaatctttaagctagtaaaaacactaatttagtgctttaataaaatg |
1209027 |
T |
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| Q |
501 |
tttgttggtcatgttacattctagtt |
526 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
1209026 |
tttgttggtcatattacattctagtt |
1209001 |
T |
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